Temporary home of the SNPlocs packages for dbSNP157 and dbSNP156

This is the temporary home of the SNPlocs packages for dbSNP157 and dbSNP156

IMPORTANT NOTES:

The SNPlocs packages for dbSNP157 and dbSNP156 require BioC >= 3.20!
When installing with install.packages() the download will take several minutes so make sure to set R_DEFAULT_INTERNET_TIMEOUT to 600 (10 minutes) or more in your .Renviron file:
```
R_DEFAULT_INTERNET_TIMEOUT=600
```
You will typically need to restart R after making this change.

dbSNP157

See here for some technical details about the SNPlocs packages for dbSNP157.

SNPlocs.Hsapiens.dbSNP157.GRCh38

SNPlocs.Hsapiens.dbSNP157.GRCh38_0.99.24.tar.gz is 7.1G and contains 1,051,335,400 rs ids.

Install it with:

library(BiocManager)
repos <- c("http://149.165.171.124/SNPlocs/", BiocManager::repositories())
install.packages("SNPlocs.Hsapiens.dbSNP157.GRCh38", repos=repos)

SNPlocs.Hsapiens.dbSNP157.GRCh37

SNPlocs.Hsapiens.dbSNP157.GRCh37_0.99.24.tar.gz is 7.0G and contains 1,027,042,850 rs ids.

Install it with:

library(BiocManager)
repos <- c("http://149.165.171.124/SNPlocs/", BiocManager::repositories())
install.packages("SNPlocs.Hsapiens.dbSNP157.GRCh37", repos=repos)

dbSNP156

See this discussion on GitHub for some context.

In particular see this comment for some technical details about the SNPlocs packages for dbSNP156.

SNPlocs.Hsapiens.dbSNP156.GRCh38

SNPlocs.Hsapiens.dbSNP156.GRCh38_0.99.24.tar.gz is 6.7G and contains 989,474,892 rs ids.

Install it with:

library(BiocManager)
repos <- c("http://149.165.171.124/SNPlocs/", BiocManager::repositories())
install.packages("SNPlocs.Hsapiens.dbSNP156.GRCh38", repos=repos)

SNPlocs.Hsapiens.dbSNP156.GRCh37

SNPlocs.Hsapiens.dbSNP156.GRCh37_0.99.24.tar.gz is 6.6G and contains 967,680,084 rs ids.

Install it with:

library(BiocManager)
repos <- c("http://149.165.171.124/SNPlocs/", BiocManager::repositories())
install.packages("SNPlocs.Hsapiens.dbSNP156.GRCh37", repos=repos)