# This is adapted from Posit (https://docs.posit.co/resources/install-r/)
export R_VERSION=4.3.0
# Install curl and gdebi-core
sudo apt update -qq
sudo apt install curl gdebi-core -y
# Fetching the `.deb` install file from Posit repository
curl -O https://cdn.rstudio.com/r/ubuntu-2204/pkgs/r-${R_VERSION}_1_amd64.deb
# Install R
sudo gdebi r-${R_VERSION}_1_amd64.deb --non-interactive -q
# Optional: create a symlink to add R to your PATH
sudo ln -s /opt/R/${R_VERSION}/bin/R /usr/local/bin/ROrchestrating Hi-C analysis with Bioconductor
Package: OHCA
Authors: Jacques Serizay [aut, cre]
Compiled: 2025-12-17
Package version: 1.7.0
R version: R Under development (unstable) (2025-10-21 r88958)
BioC version: 3.23
License: MIT + file LICENSE
Welcome
This is the landing page of the βOrchestrating Hi-C analysis with Bioconductorβ book. The primary aim of this book is to introduce the R user to Hi-C analysis. This book starts with key concepts important for the analysis of chromatin conformation capture and then presents Bioconductor tools that can be leveraged to process, analyze, explore and visualize Hi-C data.
Table of contents
This book is divided in three parts:
Part I: Introduction to Hi-C analysis
- Chapter 1: General principles and Hi-C data pre-processing
- Chapter 2: The different R classes implemented to analyze Hi-C
- Chapter 3: Manipulating Hi-C data in R
- Chapter 4: Hi-C data visualization
Part II: In-depth Hi-C analysis
- Chapter 5: Matrix-centric analysis
- Chapter 6: Interactions-centric analysis
- Chapter 7: Finding topological features from a Hi-C contact matrix
Part III: Hi-C analysis workflows
Installation & requirements
General audience
This books aims to demonstrate how to pre-process, parse and investigate Hi-C data in R. For this reason, a significant portion of this book consists of executable R code chunks. To be able to reproduce the examples demonstrated in this book and go further in the analysis of your real datasets, you will need to rely on several dependencies.
-
R >= 4.3is required. You can check R version by typingversionin an R console or in RStudio. If you do not haveR >= 4.3installed, you will need to update yourRversion, as most extra dependencies will requireR >= 4.3.
Installing R 4.3 π
Detailed instructions are available here to install R 4.3 on a Linux machine (Ubuntu 22.04).
Briefly, to install pre-compiled version of R 4.3.0:
If you have some issues when installing the Hi-C packages listed below, you may need to install the following system libraries:
sudo apt update -qq
sudo apt install -y \
automake make cmake fort77 gfortran \
bzip2 unzip ftp build-essential \
libc6 libreadline-dev \
libpng-dev libjpeg-dev libtiff-dev \
libx11-dev libxt-dev x11-common \
libharfbuzz-dev libfribidi-dev \
libfreetype6-dev libfontconfig1-dev \
libbz2-dev liblzma-dev libtool \
libxml2 libxml2-dev \
libzstd-dev zlib1g-dev \
libdb-dev libglu1-mesa-dev \
libncurses5-dev libghc-zlib-dev libncurses-dev \
libpcre3-dev libxml2-dev libblas-dev libzmq3-dev \
libssl-dev libcurl4-openssl-dev \
libgsl-dev libeigen3-dev libboost-all-dev \
libgtk2.0-dev xvfb xauth xfonts-base apt-transport-https \
libhdf5-dev libudunits2-dev libgdal-dev libgeos-dev \
libproj-dev libnode-dev libmagick++-dev-
Bioconductor >= 3.18is also required. You can check whetherBioconductoris available and its version inRby typingBiocManager::version(). If you do not haveBiocManager>= 3.18 installed, you will need to update it as follows:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(version = "3.18")- You will also need important packages, which will be described in length in this book. The following
Rcode will set up most of the extra dependencies:
Developers
For developers or advanced R users, the devel versions of these packages can be installed by installing Bioc devel version prior to package installation:
BiocManager::install(version = "devel")
BiocManager::install("HiCExperiment", ask = FALSE)
BiocManager::install("HiCool", ask = FALSE)
BiocManager::install("HiContacts", ask = FALSE)
BiocManager::install("HiContactsData", ask = FALSE)
BiocManager::install("fourDNData", ask = FALSE)
BiocManager::install("DNAZooData", ask = FALSE)Docker image
If you have docker installed, the easiest approach would be to run the following command in a shell terminal:
docker run -it ghcr.io/js2264/ohca:latest RThis will fetch a docker image with the latest development versions of the aforementioned packages pre-installed, and initiate an interactive R session.
Reproducibility
Building book
The OHCA book has been rendered in R thanks to a number of packages, including but not only:
BiocBookdevtoolsquartorebook
To build this book locally, you can run:
git clone git@github.com:js2264/OHCA.git && cd OHCA
quarto render
Warning
All dependencies listed above will be required!
The actual rendering of this book is done by GitHub Actions, and the rendered static website is hosted by GitHub Pages.
Session info
Click to expand π
sessioninfo::session_info(
installed.packages()[,"Package"],
include_base = TRUE
)
## β Session info ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
## setting value
## version R Under development (unstable) (2025-10-21 r88958)
## os macOS Ventura 13.7.8
## system x86_64, darwin20
## ui X11
## language (EN)
## collate C
## ctype en_US.UTF-8
## tz America/New_York
## date 2025-12-17
## pandoc 2.7.3 @ /usr/local/bin/ (via rmarkdown)
## quarto 1.4.553 @ /usr/local/bin/quarto
##
## β Packages ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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## automap 1.1-20 2025-07-13 [2] CRAN (R 4.6.0)
## autonomics 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## autothresholdr 1.4.3 2025-09-26 [2] CRAN (R 4.6.0)
## av 0.9.6 2025-10-20 [2] CRAN (R 4.6.0)
## available 1.1.0 2022-07-10 [2] CRAN (R 4.6.0)
## AWAggregator 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## AWAggregatorData 1.1.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## AWFisher 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## aws 2.5-6 2024-09-30 [2] CRAN (R 4.6.0)
## aws.s3 0.3.22 2025-08-19 [2] CRAN (R 4.6.0)
## aws.signature 0.6.0 2020-06-01 [2] CRAN (R 4.6.0)
## awsMethods 1.1-1 2019-05-08 [2] CRAN (R 4.6.0)
## awst 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## AzureAuth 1.3.3 2021-09-13 [2] CRAN (R 4.6.0)
## AzureGraph 1.3.5 2025-07-31 [2] CRAN (R 4.6.0)
## AzureRMR 2.4.5 2025-07-31 [2] CRAN (R 4.6.0)
## AzureStor 3.7.1 2025-08-25 [2] CRAN (R 4.6.0)
## BaalChIP 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## babelgene 22.9 2022-09-29 [2] CRAN (R 4.6.0)
## backbone 3.0.3 2025-12-08 [2] CRAN (R 4.6.0)
## backports 1.5.0 2024-05-23 [2] CRAN (R 4.6.0)
## bacon 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BADER 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## badger 0.2.5 2025-07-31 [2] CRAN (R 4.6.0)
## BadRegionFinder 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BAGS 2.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ballgown 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bambu 3.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bamlss 1.2-5 2024-10-11 [2] CRAN (R 4.6.0)
## BAMMtools 2.1.12 2024-09-12 [2] CRAN (R 4.6.0)
## bamsignals 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BANDITS 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bandle 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Banksy 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## banocc 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## barbieQ 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## barcodetrackR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## base * 4.6.0 2025-10-21 [?] local
## base64 2.0.2 2024-10-04 [2] CRAN (R 4.6.0)
## base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.6.0)
## base64url 1.4 2018-05-14 [2] CRAN (R 4.6.0)
## basecallQC 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## baseline 1.3-7 2025-06-18 [2] CRAN (R 4.6.0)
## BaseSpaceR 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Basic4Cseq 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BASiCS 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BASiCStan 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BasicSTARRseq 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## basilisk 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## basilisk.utils 1.23.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## batchCorr 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## batchelor 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BatchJobs 1.10 2025-09-10 [2] CRAN (R 4.6.0)
## BatchQC 2.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BatchSVG 1.3.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## batchtools 0.9.18 2025-08-20 [2] CRAN (R 4.6.0)
## bayesbio 1.0.0 2016-05-24 [2] CRAN (R 4.6.0)
## BayesKnockdown 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bayesm 3.1-7 2025-11-11 [2] CRAN (R 4.6.0)
## bayesplot 1.14.0 2025-08-31 [2] CRAN (R 4.6.0)
## BayesSpace 1.21.0 2025-11-28 [2] Bioconductor 3.23 (R 4.6.0)
## bayestestR 0.17.0 2025-08-29 [2] CRAN (R 4.6.0)
## bayNorm 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## baySeq 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BB 2019.10-1 2019-10-18 [2] CRAN (R 4.6.0)
## BBCAnalyzer 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BBmisc 1.13 2022-09-29 [2] CRAN (R 4.6.0)
## bbmle 1.0.25.1 2023-12-09 [2] CRAN (R 4.6.0)
## bbotk 1.8.1 2025-11-26 [2] CRAN (R 4.6.0)
## bcellViper 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BCRANK 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bcSeq 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bdsmatrix 1.3-7 2024-03-02 [2] CRAN (R 4.6.0)
## beachmat 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## beachmat.hdf5 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## beachmat.tiledb 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## beadarray 2.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BeadDataPackR 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## beanplot 1.3.1 2022-04-09 [2] CRAN (R 4.6.0)
## BEAT 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BEclear 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BEDASSLE 1.6.1 2024-01-11 [2] CRAN (R 4.6.0)
## bedbaser 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BEDMatrix 2.0.4 2024-09-06 [2] CRAN (R 4.6.0)
## beepr 2.0 2024-07-06 [2] CRAN (R 4.6.0)
## beer 1.15.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## beeswarm 0.4.0 2021-06-01 [2] CRAN (R 4.6.0)
## bench 1.1.4 2025-01-16 [2] CRAN (R 4.6.0)
## benchdamic 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## benchmarkme 1.0.8 2022-06-12 [2] CRAN (R 4.6.0)
## benchmarkmeData 1.0.4 2020-04-23 [2] CRAN (R 4.6.0)
## berryFunctions 1.22.13 2025-07-28 [2] CRAN (R 4.6.0)
## BERT 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bestNormalize 1.9.2 2025-11-30 [2] CRAN (R 4.6.0)
## betaHMM 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## betareg 3.2-4 2025-08-19 [2] CRAN (R 4.6.0)
## bettr 1.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bezier 1.1.2 2018-12-14 [2] CRAN (R 4.6.0)
## BG2 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BgeeDB 2.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BH 1.87.0-1 2024-12-17 [2] CRAN (R 4.6.0)
## BiasedUrn 2.0.12 2024-06-16 [2] CRAN (R 4.6.0)
## BiBitR 0.3.1 2017-06-30 [2] CRAN (R 4.6.0)
## bibtex 0.5.1 2023-01-26 [2] CRAN (R 4.6.0)
## BicARE 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biclust 2.0.3.1 2023-05-19 [2] CRAN (R 4.6.0)
## BiFET 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biganalytics 1.1.22 2024-03-28 [2] CRAN (R 4.6.0)
## bigassertr 0.1.7 2025-06-27 [2] CRAN (R 4.6.0)
## bigD 0.3.1 2025-04-03 [2] CRAN (R 4.6.0)
## biglm 0.9-3 2024-06-12 [2] CRAN (R 4.6.0)
## bigmelon 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bigmemory 4.6.4 2024-01-09 [2] CRAN (R 4.6.0)
## bigmemory.sri 0.1.8 2024-01-10 [2] CRAN (R 4.6.0)
## bigparallelr 0.3.2 2021-10-02 [2] CRAN (R 4.6.0)
## bigreadr 0.2.5 2022-12-06 [2] CRAN (R 4.6.0)
## bigrquery 1.6.1 2025-09-10 [2] CRAN (R 4.6.0)
## bigsnpr 1.12.21 2025-08-21 [2] CRAN (R 4.6.0)
## bigsparser 0.7.3 2024-09-06 [2] CRAN (R 4.6.0)
## bigstatsr 1.6.2 2025-07-29 [2] CRAN (R 4.6.0)
## bigutilsr 0.3.11 2025-07-30 [2] CRAN (R 4.6.0)
## billboarder 0.5.0 2024-09-09 [2] CRAN (R 4.6.0)
## BindingSiteFinder 2.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## binom 1.1-1.1 2022-05-02 [2] CRAN (R 4.6.0)
## binr 1.1.1 2022-06-26 [2] CRAN (R 4.6.0)
## bio3d 2.4-5 2024-10-29 [2] CRAN (R 4.6.0)
## bioassayR 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Biobase 2.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biobroom 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biobtreeR 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Bioc.gff 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bioCancer 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioCartaImage 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocBaseUtils 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocBook 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocBookDemo 1.9.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## BiocCheck 1.47.6 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocFHIR 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocFileCache 3.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocGenerics 0.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biocGraph 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocHubsShiny 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocIO 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biocmake 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocManager 1.30.27 2025-11-14 [2] CRAN (R 4.6.0)
## BiocNeighbors 2.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioCor 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocParallel 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocPkgTools 1.29.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biocroxytest 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocSet 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocSingular 1.27.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocSklearn 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocStyle 2.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biocthis 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocVersion 3.23.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biocViews 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiocWorkflowTools 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biodb 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biodbChebi 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bioDist 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioGA 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biomaRt 2.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biomartr 1.0.7 2023-12-02 [2] CRAN (R 4.6.0)
## biomformat 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioMVCClass 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biomvRCNS 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioNAR 1.13.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioNERO 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioNet 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bionetdata 1.1 2022-09-12 [2] CRAN (R 4.6.0)
## BioQC 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bioseq 0.1.5 2025-09-29 [2] CRAN (R 4.6.0)
## biosigner 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Biostrings 2.79.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BioTIP 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biotmle 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biotmleData 1.35.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## biovizBase 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BiRewire 3.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biscuiteer 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## biscuiteerData 1.25.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## BiSeq 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bit 4.6.0 2025-03-06 [2] CRAN (R 4.6.0)
## bit64 4.6.0-1 2025-01-16 [2] CRAN (R 4.6.0)
## bitops 1.0-9 2024-10-03 [2] CRAN (R 4.6.0)
## biwt 1.0.1 2022-06-13 [2] CRAN (R 4.6.0)
## blacksheepr 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bladderbatch 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BlandAltmanLeh 0.3.1 2015-12-23 [2] CRAN (R 4.6.0)
## blase 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## blaster 1.0.7 2023-08-22 [2] CRAN (R 4.6.0)
## blastula 0.3.6 2025-04-03 [2] CRAN (R 4.6.0)
## blima 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## blimaTestingData 1.31.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## BLMA 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## blme 1.0-6 2024-09-07 [2] CRAN (R 4.6.0)
## blob 1.2.4 2023-03-17 [2] CRAN (R 4.6.0)
## blockmodeling 1.1.8 2025-07-25 [2] CRAN (R 4.6.0)
## BloodGen3Module 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bluster 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BMA 3.18.20 2025-01-11 [2] CRAN (R 4.6.0)
## bmp 0.3.1 2025-09-22 [2] CRAN (R 4.6.0)
## bnbc 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bnem 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bnlearn 5.1 2025-08-20 [2] CRAN (R 4.6.0)
## bnstruct 1.0.15 2024-01-09 [2] CRAN (R 4.6.0)
## bnviewer 0.1.6 2020-09-14 [2] CRAN (R 4.6.0)
## BOBaFIT 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bodymapRat 1.27.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## bookdown 0.46 2025-12-05 [2] CRAN (R 4.6.0)
## BoolNet 2.1.9 2023-10-02 [2] CRAN (R 4.6.0)
## boot 1.3-32 2025-08-29 [2] CRAN (R 4.6.0)
## bootstrap 2019.6 2019-06-17 [2] CRAN (R 4.6.0)
## borealis 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BoutrosLab.plotting.general 7.1.2 2024-10-04 [2] CRAN (R 4.6.0)
## BP4RNAseq 1.21.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## BPRMeth 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BRAIN 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## branchpointer 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bread 0.4.1 2023-06-26 [2] CRAN (R 4.6.0)
## breakaway 4.8.4 2022-11-22 [2] CRAN (R 4.6.0)
## breakpointR 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## breakpointRdata 1.29.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## breastCancerMAINZ 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## breastCancerNKI 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## breastCancerTRANSBIG 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## breastCancerUNT 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## breastCancerUPP 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## breastCancerVDX 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## BreastSubtypeR 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## brendaDb 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## brew 1.0-10 2023-12-16 [2] CRAN (R 4.6.0)
## BREW3R.r 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## brgedata 1.33.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## brglm 0.7.3 2025-09-16 [2] CRAN (R 4.6.0)
## BridgeDbR 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## brio 1.1.5 2024-04-24 [2] CRAN (R 4.6.0)
## BRISC 1.0.6 2024-10-02 [2] CRAN (R 4.6.0)
## broadSeq 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## broman 0.92 2025-12-08 [2] CRAN (R 4.6.0)
## broom 1.0.11 2025-12-04 [2] CRAN (R 4.6.0)
## broom.mixed 0.2.9.6 2024-10-15 [2] CRAN (R 4.6.0)
## BrowserViz 2.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bs4Dash 2.3.5 2025-08-25 [2] CRAN (R 4.6.0)
## BSDA 1.2.2 2023-09-18 [2] CRAN (R 4.6.0)
## BSgenome 1.79.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BSgenome.Athaliana.TAIR.TAIR9 1.3.1000 2025-11-17 [2] Bioconductor
## BSgenome.Btaurus.UCSC.bosTau6 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Btaurus.UCSC.bosTau6.masked 1.3.99 2025-11-17 [2] Bioconductor
## BSgenome.Celegans.UCSC.ce10 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Celegans.UCSC.ce11 1.4.2 2025-11-17 [2] Bioconductor
## BSgenome.Celegans.UCSC.ce2 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Dmelanogaster.UCSC.dm3 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Dmelanogaster.UCSC.dm6 1.4.1 2025-11-17 [2] Bioconductor
## BSgenome.Drerio.UCSC.danRer10 1.4.2 2025-11-17 [2] Bioconductor
## BSgenome.Drerio.UCSC.danRer7 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Ecoli.NCBI.20080805 1.3.1000 2025-11-17 [2] Bioconductor
## BSgenome.Ggallus.UCSC.galGal3 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.1000genomes.hs37d5 0.99.1 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.NCBI.GRCh38 1.3.1000 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg18 1.3.1000 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg18.masked 1.3.99 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg19 1.4.3 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg19.masked 1.3.993 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg38 1.4.5 2025-11-17 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg38.masked 1.4.5 2025-11-17 [2] Bioconductor
## BSgenome.Mmulatta.UCSC.rheMac10 1.4.2 2025-11-17 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm10 1.4.3 2025-11-17 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm10.masked 1.4.3 2025-11-17 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm39 1.4.3 2025-11-17 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm8 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm8.masked 1.3.99 2025-11-17 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm9 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm9.masked 1.3.99 2025-11-17 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn4 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn5 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn5.masked 1.3.99 2025-11-17 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn6 1.4.1 2025-11-17 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn7 1.4.3 2025-11-17 [2] Bioconductor
## BSgenome.Scerevisiae.UCSC.sacCer1 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Scerevisiae.UCSC.sacCer2 1.4.0 2025-11-17 [2] Bioconductor
## BSgenome.Scerevisiae.UCSC.sacCer3 1.4.0 2025-11-17 [2] Bioconductor
## BSgenomeForge 1.11.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bsicons 0.1.2 2023-11-04 [2] CRAN (R 4.6.0)
## bslib 0.9.0 2025-01-30 [2] CRAN (R 4.6.0)
## bsplus 0.1.5 2025-04-06 [2] CRAN (R 4.6.0)
## bsseq 1.47.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bsseqData 0.49.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## bst 0.3-24 2023-01-06 [2] CRAN (R 4.6.0)
## BubbleTree 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BufferedMatrix 1.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BufferedMatrixMethods 1.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bugsigdbr 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BulkSignalR 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BUMHMM 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## bumphunter 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BumpyMatrix 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BUS 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BUScorrect 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BUSpaRse 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## BUSseq 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## butcher 0.4.0 2025-12-09 [2] CRAN (R 4.6.0)
## BWStest 0.2.3 2023-10-10 [2] CRAN (R 4.6.0)
## c3net 1.1.1.1 2022-06-24 [2] CRAN (R 4.6.0)
## C50 0.2.0 2025-04-03 [2] CRAN (R 4.6.0)
## ca 0.71.1 2020-01-24 [2] CRAN (R 4.6.0)
## cachem 1.1.0 2024-05-16 [2] CRAN (R 4.6.0)
## CaDrA 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CAEN 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CAFE 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CAGEfightR 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cageminer 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CAGEr 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CAGEWorkflow 1.27.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## Cairo 1.7-0 2025-10-29 [2] CRAN (R 4.6.0)
## CalibraCurve 1.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## calibrate 1.7.7 2020-06-19 [2] CRAN (R 4.6.0)
## callr 3.7.6 2024-03-25 [2] CRAN (R 4.6.0)
## calm 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CAMERA 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CaMutQC 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## canceR 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cancerclass 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cancerdata 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## capushe 1.1.3 2025-09-10 [2] CRAN (R 4.6.0)
## car 3.1-3 2024-09-27 [2] CRAN (R 4.6.0)
## carData 3.0-5 2022-01-06 [2] CRAN (R 4.6.0)
## cardelino 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Cardinal 3.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CardinalIO 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CARDspa 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## caret 7.0-1 2024-12-10 [2] CRAN (R 4.6.0)
## caretEnsemble 4.0.1 2024-09-12 [2] CRAN (R 4.6.0)
## CARNIVAL 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CATALYST 1.35.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## catdata 1.2.5 2025-12-04 [2] CRAN (R 4.6.0)
## Category 2.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## categoryCompare 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CatEncoders 0.1.1 2017-03-08 [2] CRAN (R 4.6.0)
## caTools 1.18.3 2024-09-04 [2] CRAN (R 4.6.0)
## CatsCradle 1.5.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CATT 2.0 2017-05-19 [2] CRAN (R 4.6.0)
## CausalR 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cba 0.2-25 2024-08-16 [2] CRAN (R 4.6.0)
## cbaf 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cBioPortalData 2.23.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CBN2Path 1.1.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CBNplot 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cbpManager 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CCAFE 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ccaPP 0.3.5 2025-10-02 [2] CRAN (R 4.6.0)
## ccImpute 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CCl4 1.49.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## CCP 1.2 2022-04-21 [2] CRAN (R 4.6.0)
## CCPlotR 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CCPROMISE 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ccrepe 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ccTensor 1.0.3 2025-08-25 [2] CRAN (R 4.6.0)
## CDFt 1.2 2021-02-18 [2] CRAN (R 4.6.0)
## CDI 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CDM 8.3-14 2025-07-13 [2] CRAN (R 4.6.0)
## celaref 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## celda 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## celestial 1.5.8 2025-09-02 [2] CRAN (R 4.6.0)
## CellBarcode 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cellbaseR 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CellBench 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## celldex 1.21.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## CelliD 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cellity 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CellMapper 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CellMapperData 1.37.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## cellmig 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cellmigRation 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CellMixS 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CellNOptR 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cellranger 1.1.0 2016-07-27 [2] CRAN (R 4.6.0)
## cellscape 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CellTrails 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cellxgenedp 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CEMiTool 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## censcyt 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Cepo 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ceRNAnetsim 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CeTF 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CexoR 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CFAssay 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cfdnakit 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cfTools 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cfToolsData 1.9.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## CGEN 3.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CGHbase 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CGHcall 2.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cghMCR 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CGHnormaliter 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CGHregions 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChAMP 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChAMPdata 2.43.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## changepoint 2.3 2024-11-04 [2] CRAN (R 4.6.0)
## changepoint.np 1.0.5 2022-10-20 [2] CRAN (R 4.6.0)
## checkmate 2.3.3 2025-08-18 [2] CRAN (R 4.6.0)
## ChemmineDrugs 1.0.2 2025-11-17 [2] Bioconductor
## ChemmineOB 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChemmineR 3.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chemometrics 1.4.4 2023-08-25 [2] CRAN (R 4.6.0)
## ChemoSpec 6.3.1 2025-09-09 [2] CRAN (R 4.6.0)
## ChemoSpecUtils 1.0.5 2025-04-12 [2] CRAN (R 4.6.0)
## CHETAH 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chevreulPlot 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chevreulProcess 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chevreulShiny 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Chicago 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chihaya 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chimeraviz 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPanalyser 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPComp 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chipenrich 2.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chipenrich.data 2.35.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPexoQual 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPexoQualExample 1.35.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPpeakAnno 3.45.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPseeker 1.47.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chipseq 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chipseqDB 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## chipseqDBData 1.27.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPseqR 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPsim 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPXpress 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChIPXpressData 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## chk 0.10.0 2025-01-24 [2] CRAN (R 4.6.0)
## chopsticks 1.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Chromatograms 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chromDraw 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChromHeatMap 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chromhmmData 0.99.2 2025-11-17 [2] Bioconductor
## chromote 0.5.1 2025-04-24 [2] CRAN (R 4.6.0)
## chromPlot 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ChromSCape 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## chron 2.3-62 2024-12-31 [2] CRAN (R 4.6.0)
## CHRONOS 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cicero 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cicerone 1.0.4 2021-01-10 [2] CRAN (R 4.6.0)
## cigarillo 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CIMICE 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## circlize 0.4.17 2025-12-08 [2] CRAN (R 4.6.0)
## circRNAprofiler 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CircSeqAlignTk 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CircStats 0.2-7 2025-06-19 [2] CRAN (R 4.6.0)
## circular 0.5-2 2025-09-25 [2] CRAN (R 4.6.0)
## CiteFuse 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Ckmeans.1d.dp 4.3.5 2023-08-19 [2] CRAN (R 4.6.0)
## class 7.3-23 2025-01-01 [2] CRAN (R 4.6.0)
## ClassifyR 3.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## classInt 0.4-11 2025-01-08 [2] CRAN (R 4.6.0)
## cleanUpdTSeq 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CleanUpRNAseq 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cleaver 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clevr 0.1.2 2023-09-16 [2] CRAN (R 4.6.0)
## clevRvis 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cli 3.6.5 2025-04-23 [2] CRAN (R 4.6.0)
## clinfun 1.1.5 2023-10-19 [2] CRAN (R 4.6.0)
## clippda 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clipper 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clipr 0.8.0 2022-02-22 [2] CRAN (R 4.6.0)
## cliProfiler 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cliqueMS 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clisymbols 1.2.0 2017-05-21 [2] CRAN (R 4.6.0)
## CLL 1.51.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## clock 0.7.3 2025-03-21 [2] CRAN (R 4.6.0)
## Clomial 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clst 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clstutils 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clue 0.3-66 2024-11-13 [2] CRAN (R 4.6.0)
## ClueR 1.4.2 2023-11-15 [2] CRAN (R 4.6.0)
## CluMSID 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CluMSIDdata 1.27.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## ClustAll 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clustComp 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cluster 2.1.8.1 2025-03-12 [2] CRAN (R 4.6.0)
## clusterCrit 1.3.0 2023-11-23 [2] CRAN (R 4.6.0)
## clusterExperiment 2.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ClusterFoldSimilarity 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clusterGeneration 1.3.8 2023-08-16 [2] CRAN (R 4.6.0)
## ClusterGVis 0.99.9 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ClusterJudge 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clusterProfiler 4.19.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ClusterR 1.3.5 2025-10-18 [2] CRAN (R 4.6.0)
## clusterRepro 0.9 2018-10-15 [2] CRAN (R 4.6.0)
## clusterSeq 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ClusterSignificance 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clusterStab 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clustifyr 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ClustIRR 1.9.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clustree 0.5.1 2023-11-05 [2] CRAN (R 4.6.0)
## clustSIGNAL 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## clustvarsel 2.3.5 2025-04-02 [2] CRAN (R 4.6.0)
## clValid 0.7 2021-02-14 [2] CRAN (R 4.6.0)
## CMA 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cMAP 1.15.1 2025-11-17 [2] local
## cMap2data 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## cmapR 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cmdfun 1.0.2 2020-10-10 [2] CRAN (R 4.6.0)
## cmprsk 2.2-12 2024-05-19 [2] CRAN (R 4.6.0)
## cn.farms 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cn.mops 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNAnorm 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNEr 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNORdt 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNORfeeder 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNORfuzzy 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNORode 1.53.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNTools 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNVfilteR 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cnvGSA 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cnvGSAdata 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## CNViz 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNVMetrics 1.15.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNVPanelizer 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNVRanger 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CNVrd2 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cobalt 4.6.1 2025-08-20 [2] CRAN (R 4.6.0)
## cobs 1.3-9-1 2025-07-02 [2] CRAN (R 4.6.0)
## CoCiteStats 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## COCOA 2.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## coda 0.19-4.1 2024-01-31 [2] CRAN (R 4.6.0)
## CodeDepends 0.6.6 2024-04-07 [2] CRAN (R 4.6.0)
## codelink 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## codetools 0.2-20 2024-03-31 [2] CRAN (R 4.6.0)
## CODEX 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## codingMatrices 0.4.0 2023-02-01 [2] CRAN (R 4.6.0)
## CoGAPS 3.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cogena 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cogeqc 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Cogito 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## coGPS 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## coin 1.4-3 2023-09-27 [2] CRAN (R 4.6.0)
## cola 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## collapse 2.1.5 2025-11-19 [2] CRAN (R 4.6.0)
## collections 0.3.9 2025-08-18 [2] CRAN (R 4.6.0)
## colonCA 1.53.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## colorBlindness 0.1.9 2021-04-17 [2] CRAN (R 4.6.0)
## colorRamps 2.3.4 2024-03-07 [2] CRAN (R 4.6.0)
## colorspace 2.1-2 2025-09-22 [2] CRAN (R 4.6.0)
## colourpicker 1.3.0 2023-08-21 [2] CRAN (R 4.6.0)
## colourvalues 0.3.11 2025-11-29 [2] CRAN (R 4.6.0)
## comapr 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## combi 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## combinat 0.0-8 2012-10-29 [2] CRAN (R 4.6.0)
## coMethDMR 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## common 1.1.4 2025-12-08 [2] CRAN (R 4.6.0)
## commonmark 2.0.0 2025-07-07 [2] CRAN (R 4.6.0)
## compareGroups 4.10.1 2025-10-29 [2] CRAN (R 4.6.0)
## COMPASS 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## compcodeR 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## compEpiTools 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## P compiler 4.6.0 2025-10-21 [2] local
## ComplexHeatmap 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ComplexUpset 1.3.3 2021-12-11 [2] CRAN (R 4.6.0)
## COMPoissonReg 0.8.1 2023-11-29 [2] CRAN (R 4.6.0)
## compositions 2.0-9 2025-08-21 [2] CRAN (R 4.6.0)
## CompoundDb 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CompQuadForm 1.4.4 2025-07-13 [2] CRAN (R 4.6.0)
## ComPrAn 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## comprehenr 0.6.10 2021-01-31 [2] CRAN (R 4.6.0)
## compSPOT 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## concaveman 1.2.0 2025-10-06 [2] CRAN (R 4.6.0)
## concordexR 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## condformat 0.10.1 2023-10-08 [2] CRAN (R 4.6.0)
## condiments 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CONFESS 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CONFESSdata 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## config 0.3.2 2023-08-30 [2] CRAN (R 4.6.0)
## configr 0.3.5 2020-07-17 [2] CRAN (R 4.6.0)
## confintr 1.0.2 2023-06-04 [2] CRAN (R 4.6.0)
## conflicted 1.2.0 2023-02-01 [2] CRAN (R 4.6.0)
## conicfit 1.0.4 2015-10-05 [2] CRAN (R 4.6.0)
## consensus 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ConsensusClusterPlus 1.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## consensusOV 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## consensusSeekeR 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## consICA 2.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ConsRank 2.1.5 2025-04-15 [2] CRAN (R 4.6.0)
## CONSTANd 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## contrast 0.24.2 2022-10-05 [2] CRAN (R 4.6.0)
## conumee 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## convert 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CooccurrenceAffinity 1.0.2 2025-06-27 [2] CRAN (R 4.6.0)
## coop 0.6-3 2021-09-19 [2] CRAN (R 4.6.0)
## copa 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## copula 1.1-6 2025-03-18 [2] CRAN (R 4.6.0)
## CopyNumberPlots 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Coralysis 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## coRdon 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CoreGx 2.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Cormotif 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## corncob 0.4.2 2025-03-29 [2] CRAN (R 4.6.0)
## coro 1.1.0 2024-11-05 [2] CRAN (R 4.6.0)
## corpcor 1.6.10 2021-09-16 [2] CRAN (R 4.6.0)
## corral 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## corrgram 1.14 2021-04-29 [2] CRAN (R 4.6.0)
## corrplot 0.95 2024-10-14 [2] CRAN (R 4.6.0)
## coseq 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CoSIA 1.11.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## COSMIC.67 1.47.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## cosmiq 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cosmosR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## COSNet 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## COTAN 2.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## countrycode 1.6.1 2025-03-31 [2] CRAN (R 4.6.0)
## countsimQC 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## covEB 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CoverageView 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## covr 3.6.5 2025-11-09 [2] CRAN (R 4.6.0)
## covRNA 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cowplot 1.2.0 2025-07-07 [2] CRAN (R 4.6.0)
## coxme 2.2-22 2024-08-23 [2] CRAN (R 4.6.0)
## coxrobust 1.0.2 2025-08-18 [2] CRAN (R 4.6.0)
## cplm 0.7-12.1 2024-09-21 [2] CRAN (R 4.6.0)
## cpp11 0.5.2 2025-03-03 [2] CRAN (R 4.6.0)
## CPSM 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cpvSNP 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cqn 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cramer 0.9-4 2024-02-05 [2] CRAN (R 4.6.0)
## crayon 1.5.3 2024-06-20 [2] CRAN (R 4.6.0)
## credentials 2.0.3 2025-09-12 [2] CRAN (R 4.6.0)
## crew 1.3.0 2025-09-13 [2] CRAN (R 4.6.0)
## CRImage 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CRISPRball 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprBase 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprBowtie 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprBwa 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprDesign 1.13.9 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprScore 1.15.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprScoreData 1.15.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## CRISPRseek 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprShiny 1.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CrispRVariants 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprVerse 1.13.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crisprViz 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crlmm 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crmn 0.0.21 2020-02-10 [2] CRAN (R 4.6.0)
## crochet 2.3.0 2020-05-20 [2] CRAN (R 4.6.0)
## crosstalk 1.2.2 2025-08-26 [2] CRAN (R 4.6.0)
## crul 1.6.0 2025-07-23 [2] CRAN (R 4.6.0)
## crumblr 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## crupR 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CSAR 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## csaw 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## csawBook 1.19.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## csawUsersGuide 1.27.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## csdR 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CSOA 1.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CSSQ 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ctc 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CTdata 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CTDquerier 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CTexploreR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cTRAP 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ctsGE 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CTSV 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cubature 2.1.4-1 2025-11-22 [2] CRAN (R 4.6.0)
## Cubist 0.5.1 2025-10-25 [2] CRAN (R 4.6.0)
## cummeRbund 2.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CuratedAtlasQueryR 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## curatedBladderData 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## curatedMetagenomicData 3.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## curatedOvarianData 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## curatedTBData 2.7.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## curatedTCGAData 1.33.1 2025-11-18 [2] Bioconductor 3.23 (R 4.6.0)
## curl 7.0.0 2025-08-19 [2] CRAN (R 4.6.0)
## customCMPdb 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## customProDB 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cvar 0.5 2022-11-03 [2] CRAN (R 4.6.0)
## cvAUC 1.1.4 2022-01-17 [2] CRAN (R 4.6.0)
## cvms 2.0.0 2025-11-10 [2] CRAN (R 4.6.0)
## cvTools 0.3.3 2024-03-13 [2] CRAN (R 4.6.0)
## CVXR 1.0-15 2024-11-07 [2] CRAN (R 4.6.0)
## cyanoFilter 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cycle 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cydar 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cypress 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CytoDx 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CyTOFpower 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cytofWorkflow 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## CytoGLMM 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cytoKernel 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cytolib 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cytomapper 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CytoMDS 1.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cytoMEM 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cytometree 2.0.6 2025-07-24 [2] CRAN (R 4.6.0)
## CytoML 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CytoPipeline 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## CytoPipelineGUI 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## cytoviewer 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dada2 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dagLogo 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## daMA 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DAMEfinder 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DaMiRseq 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Damsel 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dandelionR 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DAPAR 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DAPARdata 1.41.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## dar 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DART 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dashboardthemes 1.1.6 2022-07-13 [2] CRAN (R 4.6.0)
## data.table 1.17.8 2025-07-10 [2] CRAN (R 4.6.0)
## data.tree 1.2.0 2025-08-25 [2] CRAN (R 4.6.0)
## DataEditR 0.1.5 2022-03-08 [2] CRAN (R 4.6.0)
## datamods 1.5.3 2024-10-02 [2] CRAN (R 4.6.0)
## P datasets * 4.6.0 2025-10-21 [2] local
## DataVisualizations 1.4.0 2025-10-31 [2] CRAN (R 4.6.0)
## datawizard 1.3.0 2025-10-11 [2] CRAN (R 4.6.0)
## DBI 1.2.3 2024-06-02 [2] CRAN (R 4.6.0)
## dbplyr 2.5.1 2025-09-10 [2] CRAN (R 4.6.0)
## dbscan 1.2.3 2025-08-20 [2] CRAN (R 4.6.0)
## dcanr 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DCATS 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dcGSA 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ddCt 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ddPCRclust 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DDRTree 0.1.5 2017-04-30 [2] CRAN (R 4.6.0)
## dearseq 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## debrowser 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## debugme 1.2.0 2024-04-25 [2] CRAN (R 4.6.0)
## DECIPHER 3.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## decompTumor2Sig 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DeconRNASeq 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## decontam 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## decontX 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DeconvoBuddies 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## deconvR 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## decor 1.0.2 2023-07-01 [2] CRAN (R 4.6.0)
## decoupleR 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DeeDeeExperiment 1.1.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DeepPINCS 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## deepSNV 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DeepTarget 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DEFormats 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DegCre 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DegNorm 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DEGreport 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DEGseq 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Delaporte 8.4.2 2025-07-17 [2] CRAN (R 4.6.0)
## DelayedArray 0.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DelayedDataFrame 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DelayedMatrixStats 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DelayedRandomArray 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DelayedTensor 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## deldir 2.0-4 2024-02-28 [2] CRAN (R 4.6.0)
## DELocal 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## deltaCaptureC 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## deltaGseg 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DeMAND 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## deming 1.4-1 2024-06-26 [2] CRAN (R 4.6.0)
## DeMixT 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## demuxmix 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## demuxSNP 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dendextend 1.19.1 2025-07-15 [2] CRAN (R 4.6.0)
## dendsort 0.3.4 2021-04-20 [2] CRAN (R 4.6.0)
## densEstBayes 1.0-2.2 2023-03-31 [2] CRAN (R 4.6.0)
## densvis 1.21.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DEoptim 2.2-8 2022-11-11 [2] CRAN (R 4.6.0)
## DEoptimR 1.1-4 2025-07-27 [2] CRAN (R 4.6.0)
## DepecheR 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DepInfeR 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## depmap 1.25.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## depmixS4 1.5-1 2025-05-11 [2] CRAN (R 4.6.0)
## DEqMS 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## derfinder 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## derfinderData 2.29.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## derfinderHelper 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## derfinderPlot 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Deriv 4.2.0 2025-06-20 [2] CRAN (R 4.6.0)
## desc 1.4.3 2023-12-10 [2] CRAN (R 4.6.0)
## DEScan2 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DescTools 0.99.60 2025-03-28 [2] CRAN (R 4.6.0)
## DESeq2 1.51.6 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DEsingle 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## deSolve 1.40 2023-11-27 [2] CRAN (R 4.6.0)
## DESpace 2.3.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## destiny 3.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DEsubs 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## detectseparation 0.3 2022-08-26 [2] CRAN (R 4.6.0)
## devEMF 4.5-1 2025-03-24 [2] CRAN (R 4.6.0)
## devtools 2.4.6 2025-10-03 [2] CRAN (R 4.6.0)
## DEWSeq 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DExMA 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DExMAdata 1.19.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## DEXSeq 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DFP 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DFplyr 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DGEobj 1.1.2 2022-05-16 [2] CRAN (R 4.6.0)
## DGEobj.utils 1.0.6 2022-05-19 [2] CRAN (R 4.6.0)
## dgof 1.5.1 2024-10-09 [2] CRAN (R 4.6.0)
## diagram 1.6.5 2020-09-30 [2] CRAN (R 4.6.0)
## DiagrammeR 1.0.11 2024-02-02 [2] CRAN (R 4.6.0)
## DiceKriging 1.6.1 2025-10-21 [2] CRAN (R 4.6.0)
## diceR 3.1.0 2025-06-19 [2] CRAN (R 4.6.0)
## dichromat 2.0-0.1 2022-05-02 [2] CRAN (R 4.6.0)
## DiffBind 3.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diffcoexp 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DiffCorr 0.4.5 2025-06-08 [2] CRAN (R 4.6.0)
## diffcyt 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DifferentialRegulation 2.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diffGeneAnalysis 1.93.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diffHic 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DiffLogo 2.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diffobj 0.3.6 2025-04-21 [2] CRAN (R 4.6.0)
## diffuStats 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diffUTR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diffviewer 0.1.2 2024-06-12 [2] CRAN (R 4.6.0)
## digest 0.6.39 2025-11-19 [2] CRAN (R 4.6.0)
## diggit 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diggitdata 1.43.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## Dino 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dinoR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## diptest 0.77-2 2025-08-20 [2] CRAN (R 4.6.0)
## dir.expiry 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## directlabels 2025.6.24 2025-06-24 [2] CRAN (R 4.6.0)
## directPA 1.5.1 2023-11-16 [2] CRAN (R 4.6.0)
## DirichletMultinomial 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DirichletReg 0.7-2 2025-05-31 [2] CRAN (R 4.6.0)
## dirmult 0.1.3-5 2022-03-21 [2] CRAN (R 4.6.0)
## discordant 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DiscoRhythm 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## distances 0.1.13 2025-11-24 [2] CRAN (R 4.6.0)
## distill 1.6 2023-10-06 [2] CRAN (R 4.6.0)
## distillery 1.2-2 2024-11-28 [2] CRAN (R 4.6.0)
## distinct 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## distr 2.9.7 2025-01-12 [2] CRAN (R 4.6.0)
## distributional 0.5.0 2024-09-17 [2] CRAN (R 4.6.0)
## distributions3 0.2.3 2025-09-12 [2] CRAN (R 4.6.0)
## dittoSeq 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## divergence 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dixonTest 1.0.4 2022-08-22 [2] CRAN (R 4.6.0)
## dks 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DLBCL 1.51.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## dlstats 0.1.7 2023-05-24 [2] CRAN (R 4.6.0)
## DMCFB 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DMCHMM 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dmGsea 1.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dml 1.1.0 2015-08-29 [2] CRAN (R 4.6.0)
## DMRcaller 1.43.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DMRcate 3.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DMRcatedata 2.29.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## DMRScan 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dmrseq 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DNABarcodeCompatibility 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DNABarcodes 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DNAcopy 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DNAcycP2 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DNAfusion 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DNAshapeR 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DNAZooData 1.11.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## DNEA 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DO.db 2.9 2025-11-17 [2] Bioconductor
## doBy 4.7.1 2025-12-02 [2] CRAN (R 4.6.0)
## docopt 0.7.2 2025-03-25 [2] CRAN (R 4.6.0)
## doFuture 1.1.3 2025-12-09 [2] CRAN (R 4.6.0)
## doMC 1.3.8 2022-02-05 [2] CRAN (R 4.6.0)
## dominatR 0.99.5 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dominatRData 0.99.1 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## DominoEffect 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dominoSignal 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## doParallel 1.0.17 2022-02-07 [2] CRAN (R 4.6.0)
## doppelgangR 1.39.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## doRNG 1.8.6.2 2025-04-02 [2] CRAN (R 4.6.0)
## dorothea 1.23.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## Doscheda 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DOSE 4.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## doseR 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## doSNOW 1.0.20 2022-02-04 [2] CRAN (R 4.6.0)
## dotCall64 1.2 2024-10-04 [2] CRAN (R 4.6.0)
## DOtools 1.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DoubleExpSeq 1.1 2015-09-04 [2] CRAN (R 4.6.0)
## doubletrouble 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## downlit 0.4.5 2025-11-14 [2] CRAN (R 4.6.0)
## downloader 0.4.1 2025-03-26 [2] CRAN (R 4.6.0)
## downloadthis 0.5.0 2025-07-11 [2] CRAN (R 4.6.0)
## dplyr 1.1.4 2023-11-17 [2] CRAN (R 4.6.0)
## dqrng 0.4.1 2024-05-28 [2] CRAN (R 4.6.0)
## drawer 0.2.0.1 2022-08-19 [2] CRAN (R 4.6.0)
## drawProteins 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## drc 3.0-1 2016-08-30 [2] CRAN (R 4.6.0)
## dreamlet 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DrImpute 1.0 2017-07-15 [2] CRAN (R 4.6.0)
## DRIMSeq 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DriverNet 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DropletTestFiles 1.21.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## DropletUtils 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## drosgenome1.db 3.13.0 2025-11-17 [2] Bioconductor
## drosophila2probe 2.18.0 2025-11-17 [2] Bioconductor
## drtmle 1.1.2 2023-01-05 [2] CRAN (R 4.6.0)
## drugTargetInteractions 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DrugVsDisease 2.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DrugVsDiseasedata 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## DspikeIn 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DSS 2.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dStruct 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## DT 0.34.0 2025-09-02 [2] CRAN (R 4.6.0)
## DTA 2.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dtangle 2.0.9 2019-12-01 [2] CRAN (R 4.6.0)
## dtplyr 1.3.2 2025-09-10 [2] CRAN (R 4.6.0)
## dtt 0.1-2.1 2025-06-17 [2] CRAN (R 4.6.0)
## dtw 1.23-1 2022-09-19 [2] CRAN (R 4.6.0)
## duckdb 1.4.3 2025-12-10 [2] CRAN (R 4.6.0)
## Dune 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dunn.test 1.3.6 2024-04-12 [2] CRAN (R 4.6.0)
## DuoClustering2018 1.29.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## DuplexDiscovereR 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dupRadar 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dyebias 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## dyebiasexamples 1.51.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## dynamicTreeCut 1.63-1 2016-03-11 [2] CRAN (R 4.6.0)
## DynDoc 1.89.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## e1071 1.7-16 2024-09-16 [2] CRAN (R 4.6.0)
## earth 5.3.4 2024-10-05 [2] CRAN (R 4.6.0)
## easier 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## easierData 1.17.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## EasyCellType 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## easylift 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## easyPubMed 3.1.6 2025-08-25 [2] CRAN (R 4.6.0)
## easyreporting 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## easyRNASeq 2.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EBarrays 2.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EBcoexpress 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EBImage 4.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EBSEA 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EBSeq 2.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## echarts4r 0.4.6 2025-09-11 [2] CRAN (R 4.6.0)
## ecodist 2.1.3 2023-10-30 [2] CRAN (R 4.6.0)
## ecodive 2.2.0 2025-12-04 [2] CRAN (R 4.6.0)
## ecolicdf 2.18.0 2025-11-17 [2] Bioconductor
## ecoliLeucine 1.51.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## ecolitk 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ECOSolveR 0.5.5 2023-05-15 [2] CRAN (R 4.6.0)
## ecp 3.1.6 2024-08-26 [2] CRAN (R 4.6.0)
## Ecume 0.9.2 2024-05-28 [2] CRAN (R 4.6.0)
## EDASeq 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## edge 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## edgeR 4.9.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EDIRquery 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## eds 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## effectsize 1.0.1 2025-05-27 [2] CRAN (R 4.6.0)
## effsize 0.8.1 2020-10-05 [2] CRAN (R 4.6.0)
## EGAD 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## egg 0.4.5 2019-07-13 [2] CRAN (R 4.6.0)
## EGSEA 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EGSEA123 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## EGSEAdata 1.39.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## einsum 0.1.2 2023-08-28 [2] CRAN (R 4.6.0)
## eiR 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## eisaR 1.23.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## elasticnet 1.3 2020-05-15 [2] CRAN (R 4.6.0)
## elitism 1.1.1 2023-09-02 [2] CRAN (R 4.6.0)
## ellipse 0.5.0 2023-07-20 [2] CRAN (R 4.6.0)
## ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.6.0)
## ellmer 0.4.0 2025-11-15 [2] CRAN (R 4.6.0)
## ELMER 2.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ELMER.data 2.35.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## elsa 1.1-28 2020-03-19 [2] CRAN (R 4.6.0)
## ELViS 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## embed 1.2.1 2025-12-01 [2] CRAN (R 4.6.0)
## emdbook 1.3.14 2025-07-23 [2] CRAN (R 4.6.0)
## emdist 0.3-3 2023-08-18 [2] CRAN (R 4.6.0)
## EMDomics 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## emmeans 2.0.0 2025-10-29 [2] CRAN (R 4.6.0)
## emoji 16.0.0 2024-10-28 [2] CRAN (R 4.6.0)
## emojifont 0.5.5 2021-04-20 [2] CRAN (R 4.6.0)
## EmpiricalBrownsMethod 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## energy 1.7-12 2024-08-24 [2] CRAN (R 4.6.0)
## english 1.2-6 2021-08-21 [2] CRAN (R 4.6.0)
## EnhancedVolcano 1.29.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## enhancerHomologSearch 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EnMCB 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ENmix 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EnrichDO 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EnrichedHeatmap 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EnrichmentBrowser 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## enrichplot 1.31.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## enrichR 3.4 2025-02-02 [2] CRAN (R 4.6.0)
## enrichViewNet 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EnsDb.Hsapiens.v75 2.99.0 2025-11-17 [2] Bioconductor
## EnsDb.Hsapiens.v79 2.99.0 2025-11-17 [2] Bioconductor
## EnsDb.Hsapiens.v86 2.99.0 2025-11-17 [2] Bioconductor
## EnsDb.Mmusculus.v79 2.99.0 2025-11-17 [2] Bioconductor
## ensembldb 2.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## entropy 1.3.2 2025-04-07 [2] CRAN (R 4.6.0)
## enviPat 2.6 2022-10-21 [2] CRAN (R 4.6.0)
## EnvStats 3.1.0 2025-04-24 [2] CRAN (R 4.6.0)
## epialleleR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EpiCompare 1.15.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EPICv2manifest 0.99.7 2024-03-13 [2] Bioconductor 3.19 (R 4.6.0)
## epidecodeR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EpiDISH 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epigenomix 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epigraHMM 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EpiMix 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EpiMix.data 1.13.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## epimutacions 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epimutacionsData 1.15.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## epiNEM 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EpipwR 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## EpipwR.data 1.5.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## epiR 2.0.88 2025-10-21 [2] CRAN (R 4.6.0)
## epiregulon 2.1.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epiregulon.extra 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epistack 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epistasisGA 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epivizr 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epivizrChart 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epivizrData 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epivizrServer 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## epivizrStandalone 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## erccdashboard 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ERSSA 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## escape 2.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## escheR 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## esetVis 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## esquisse 2.1.0 2025-02-21 [2] CRAN (R 4.6.0)
## estimability 1.5.1 2024-05-12 [2] CRAN (R 4.6.0)
## estrogen 1.57.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## etrunct 0.1 2016-07-04 [2] CRAN (R 4.6.0)
## eudysbiome 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## eulerr 7.0.4 2025-09-24 [2] CRAN (R 4.6.0)
## europepmc 0.4.3 2023-09-20 [2] CRAN (R 4.6.0)
## eva 0.2.6 2020-11-15 [2] CRAN (R 4.6.0)
## evaluate 1.0.5 2025-08-27 [2] CRAN (R 4.6.0)
## evaluomeR 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## evd 2.3-7.1 2024-09-21 [2] CRAN (R 4.6.0)
## EventPointer 3.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## evmix 2.12 2019-09-03 [2] CRAN (R 4.6.0)
## EWCE 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ewceData 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## Exact 3.3 2024-07-21 [2] CRAN (R 4.6.0)
## exactRankTests 0.8-35 2022-04-26 [2] CRAN (R 4.6.0)
## excelR 0.4.0 2020-03-09 [2] CRAN (R 4.6.0)
## excluderanges 0.99.10 2025-08-27 [2] Bioconductor 3.22 (R 4.6.0)
## ExCluster 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ExiMiR 2.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ExperimentHub 3.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ExperimentHubData 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ExperimentSubset 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## expint 0.1-9 2025-11-08 [2] CRAN (R 4.6.0)
## ExploreModelMatrix 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## expm 1.0-0 2024-08-19 [2] CRAN (R 4.6.0)
## ExPosition 2.11.0 2025-04-13 [2] CRAN (R 4.6.0)
## ExpressionAtlas 2.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ExpressionNormalizationWorkflow 1.37.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## ExtDist 0.7-4 2025-09-23 [2] CRAN (R 4.6.0)
## extraChIPs 1.15.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## extraDistr 1.10.0 2023-11-30 [2] CRAN (R 4.6.0)
## extRemes 2.2-1 2025-05-16 [2] CRAN (R 4.6.0)
## EZtune 3.1.1 2021-12-10 [2] CRAN (R 4.6.0)
## faahKO 1.51.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## fabia 2.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fabricatr 1.0.2 2024-01-16 [2] CRAN (R 4.6.0)
## factDesign 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## factoextra 1.0.7 2020-04-01 [2] CRAN (R 4.6.0)
## FactoInvestigate 1.9 2023-11-27 [2] CRAN (R 4.6.0)
## FactoMineR 2.12 2025-07-23 [2] CRAN (R 4.6.0)
## factR 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## faers 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FamAgg 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## famat 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fANCOVA 0.6-1 2020-11-13 [2] CRAN (R 4.6.0)
## fansi 1.0.7 2025-11-19 [2] CRAN (R 4.6.0)
## FANTOM3and4CAGE 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## farver 2.1.2 2024-05-13 [2] CRAN (R 4.6.0)
## fastcluster 1.3.0 2025-05-07 [2] CRAN (R 4.6.0)
## fastDummies 1.7.5 2025-01-20 [2] CRAN (R 4.6.0)
## fastICA 1.2-7 2024-12-11 [2] CRAN (R 4.6.0)
## fastmap 1.2.0 2024-05-15 [2] CRAN (R 4.6.0)
## fastmatch 1.1-6 2024-12-23 [2] CRAN (R 4.6.0)
## fastmatrix 0.6-4 2025-10-23 [2] CRAN (R 4.6.0)
## FastqCleaner 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fastqcr 0.1.3 2023-02-18 [2] CRAN (R 4.6.0)
## fastreeR 2.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fastseg 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fBasics 4052.98 2025-12-07 [2] CRAN (R 4.6.0)
## fCCAC 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fCI 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fclust 2.1.3 2025-10-18 [2] CRAN (R 4.6.0)
## FCPS 1.3.5 2025-10-30 [2] CRAN (R 4.6.0)
## fcScan 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fda 6.3.0 2025-05-21 [2] CRAN (R 4.6.0)
## fdatest 2.1.1 2022-05-04 [2] CRAN (R 4.6.0)
## FDb.InfiniumMethylation.hg18 2.2.0 2025-11-17 [2] Bioconductor
## FDb.InfiniumMethylation.hg19 2.2.0 2025-11-17 [2] Bioconductor
## FDb.UCSC.tRNAs 1.0.1 2025-11-17 [2] Bioconductor
## fdrame 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fdrtool 1.2.18 2024-08-20 [2] CRAN (R 4.6.0)
## fds 1.8 2018-10-31 [2] CRAN (R 4.6.0)
## FEAST 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FeatSeekR 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## feature 1.2.15 2021-02-10 [2] CRAN (R 4.6.0)
## fedup 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FELLA 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fenr 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ff 4.5.2 2025-01-13 [2] CRAN (R 4.6.0)
## ffpe 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ffpeExampleData 1.49.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## fftw 1.0-9 2024-09-20 [2] CRAN (R 4.6.0)
## fftwtools 0.9-11 2021-03-01 [2] CRAN (R 4.6.0)
## fGarch 4033.92 2024-03-26 [2] CRAN (R 4.6.0)
## fgga 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FGNet 3.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fgsea 1.37.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fibroEset 1.53.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## fields 17.1 2025-09-08 [2] CRAN (R 4.6.0)
## filelock 1.0.3 2023-12-11 [2] CRAN (R 4.6.0)
## filematrix 1.3 2018-02-27 [2] CRAN (R 4.6.0)
## fillpattern 1.0.2 2024-06-24 [2] CRAN (R 4.6.0)
## FilterFFPE 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## findIPs 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FindIT2 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## findpython 1.0.9 2024-11-19 [2] CRAN (R 4.6.0)
## FinfoMDS 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fingerprint 3.5.7 2018-01-07 [2] CRAN (R 4.6.0)
## FIs 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## FISHalyseR 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fishpond 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fission 1.31.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## fit.models 0.64 2020-08-02 [2] CRAN (R 4.6.0)
## fitdistrplus 1.2-4 2025-07-03 [2] CRAN (R 4.6.0)
## FitHiC 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flagme 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FLAMES 2.5.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flashClust 1.01-2 2012-08-21 [2] CRAN (R 4.6.0)
## flatxml 0.1.1 2020-12-01 [2] CRAN (R 4.6.0)
## Fletcher2013a 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## Fletcher2013b 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## flexclust 1.5.0 2025-02-28 [2] CRAN (R 4.6.0)
## flexdashboard 0.6.2 2023-08-11 [2] CRAN (R 4.6.0)
## flexmix 2.3-20 2025-02-28 [2] CRAN (R 4.6.0)
## FlexParamCurve 1.5-7 2025-08-26 [2] CRAN (R 4.6.0)
## flextable 0.9.10 2025-08-24 [2] CRAN (R 4.6.0)
## float 0.3-3 2025-03-12 [2] CRAN (R 4.6.0)
## flock 0.7 2016-11-12 [2] CRAN (R 4.6.0)
## flowAI 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowBeads 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowBin 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowcatchR 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowCHIC 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowClean 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowClust 3.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowCore 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowCut 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowCyBar 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowDensity 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowFP 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowGate 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowGraph 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowMatch 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowMeans 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowMerge 2.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowPeaks 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowPloidy 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowPloidyData 1.37.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## flowPlots 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FlowSOM 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FlowSorted.Blood.450k 1.49.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## FlowSorted.Blood.EPIC 2.15.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## flowSpecs 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowStats 4.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowTime 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowTrans 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowViz 1.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowVS 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowWorkspace 4.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## flowWorkspaceData 3.23.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## fluentGenomics 1.23.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## fmcsR 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## FME 1.3.6.4 2025-07-25 [2] CRAN (R 4.6.0)
## fmrs 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fmsb 0.7.6 2024-01-19 [2] CRAN (R 4.6.0)
## FMStable 0.1-4 2022-06-06 [2] CRAN (R 4.6.0)
## FNN 1.1.4.1 2024-09-22 [2] CRAN (R 4.6.0)
## fobitools 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fontawesome 0.5.3 2024-11-16 [2] CRAN (R 4.6.0)
## fontBitstreamVera 0.1.1 2017-02-01 [2] CRAN (R 4.6.0)
## fontLiberation 0.1.0 2016-10-15 [2] CRAN (R 4.6.0)
## fontquiver 0.2.1 2017-02-01 [2] CRAN (R 4.6.0)
## forcats 1.0.1 2025-09-25 [2] CRAN (R 4.6.0)
## foreach 1.5.2 2022-02-02 [2] CRAN (R 4.6.0)
## forecast 8.24.0 2025-04-08 [2] CRAN (R 4.6.0)
## foreign 0.8-90 2025-03-31 [2] CRAN (R 4.6.0)
## forestplot 3.1.7 2025-06-12 [2] CRAN (R 4.6.0)
## formatR 1.14 2023-01-17 [2] CRAN (R 4.6.0)
## formattable 0.2.1 2021-01-07 [2] CRAN (R 4.6.0)
## Formula 1.2-5 2023-02-24 [2] CRAN (R 4.6.0)
## formula.tools 1.7.1 2018-03-01 [2] CRAN (R 4.6.0)
## fossil 0.4.0 2020-03-23 [2] CRAN (R 4.6.0)
## fourDNData 1.11.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## fpc 2.2-13 2024-09-24 [2] CRAN (R 4.6.0)
## fracdiff 1.5-3 2024-02-01 [2] CRAN (R 4.6.0)
## fractional 0.1.3 2016-02-15 [2] CRAN (R 4.6.0)
## frenchFISH 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fresh 0.2.2 2025-09-04 [2] CRAN (R 4.6.0)
## FRGEpistasis 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## frma 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## frmaExampleData 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## frmaTools 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## fs 1.6.6 2025-04-12 [2] CRAN (R 4.6.0)
## FSA 0.10.0 2025-05-06 [2] CRAN (R 4.6.0)
## fscache 1.0.5 2024-06-02 [2] CRAN (R 4.6.0)
## FSelector 0.34 2023-08-22 [2] CRAN (R 4.6.0)
## fst 0.9.8 2022-02-08 [2] CRAN (R 4.6.0)
## fstcore 0.10.0 2025-02-10 [2] CRAN (R 4.6.0)
## functional 0.6 2014-07-16 [2] CRAN (R 4.6.0)
## funkycells 1.1.1 2023-08-09 [2] CRAN (R 4.6.0)
## funOmics 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## funtooNorm 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## furrr 0.3.1 2022-08-15 [2] CRAN (R 4.6.0)
## FuseSOM 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## futile.logger 1.4.3 2016-07-10 [2] CRAN (R 4.6.0)
## futile.options 1.0.1 2018-04-20 [2] CRAN (R 4.6.0)
## future 1.68.0 2025-11-17 [2] CRAN (R 4.6.0)
## future.apply 1.20.1 2025-12-09 [2] CRAN (R 4.6.0)
## fuzzyjoin 0.1.6.1 2025-07-10 [2] CRAN (R 4.6.0)
## G4SNVHunter 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GA 3.2.4 2024-01-28 [2] CRAN (R 4.6.0)
## GA4GHclient 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GA4GHshiny 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gaga 2.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gage 2.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gageData 2.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## gam 1.22-7 2025-12-10 [2] CRAN (R 4.6.0)
## gamlss 5.5-0 2025-08-19 [2] CRAN (R 4.6.0)
## gamlss.data 6.0-7 2025-09-04 [2] CRAN (R 4.6.0)
## gamlss.dist 6.1-1 2023-08-23 [2] CRAN (R 4.6.0)
## gamlss.tr 5.1-9 2024-01-30 [2] CRAN (R 4.6.0)
## gamm4 0.2-7 2025-04-22 [2] CRAN (R 4.6.0)
## gap 1.6 2024-08-27 [2] CRAN (R 4.6.0)
## gap.datasets 0.0.6 2023-08-25 [2] CRAN (R 4.6.0)
## GAprediction 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## garfield 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gargle 1.6.0 2025-09-03 [2] CRAN (R 4.6.0)
## GARS 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GateFinder 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gatom 1.9.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gbm 2.2.2 2024-06-28 [2] CRAN (R 4.6.0)
## GBScleanR 2.5.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gbutils 0.5 2022-05-27 [2] CRAN (R 4.6.0)
## gcapc 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gcatest 2.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gclus 1.3.3 2025-03-28 [2] CRAN (R 4.6.0)
## GCPtools 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gCrisprTools 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gcrma 2.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gcspikelite 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## gdata 3.0.1 2024-10-22 [2] CRAN (R 4.6.0)
## GDCRNATools 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gDNAinRNAseqData 1.11.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## gDNAx 1.9.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gDR 1.9.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gDRcore 1.9.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gDRimport 1.9.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gDRstyle 1.9.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gDRtestData 1.9.1 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## gDRutils 1.9.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GDSArray 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gdsfmt 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gdtools 0.4.4 2025-10-06 [2] CRAN (R 4.6.0)
## GeDi 1.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geeM 0.10.1 2018-06-18 [2] CRAN (R 4.6.0)
## geepack 1.3.13 2025-10-14 [2] CRAN (R 4.6.0)
## geigen 2.3 2019-05-30 [2] CRAN (R 4.6.0)
## GEM 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gemini 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gemma.R 3.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genalg 0.2.1 2022-04-04 [2] CRAN (R 4.6.0)
## genArise 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geneAttribution 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneBreak 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geneClassifiers 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneExpressionSignature 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genefilter 1.93.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genefu 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneGA 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genekitr 1.2.8 2024-09-06 [2] CRAN (R 4.6.0)
## geneLenDataBase 1.47.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## GeneMeta 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneNet 1.2.17 2025-04-07 [2] CRAN (R 4.6.0)
## GeneNetworkBuilder 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneOverlap 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geneplast 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geneplast.data 0.99.9 2024-02-28 [2] Bioconductor 3.19 (R 4.6.0)
## geneplast.data.string.v91 0.99.6 2025-11-17 [2] Bioconductor
## geneplotter 1.89.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geneRecommender 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneRegionScan 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## generegulation 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## generics 0.1.4 2025-05-09 [2] CRAN (R 4.6.0)
## geneRxCluster 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneSelectMMD 2.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geneset 0.2.7 2022-11-20 [2] CRAN (R 4.6.0)
## GENESIS 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneStructureTools 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geNetClassifier 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genetics 1.3.8.1.3 2021-03-01 [2] CRAN (R 4.6.0)
## GeneticsPed 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeneTonic 3.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geneXtendeR 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GENIE3 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genieclust 1.2.0 2025-07-24 [2] CRAN (R 4.6.0)
## genio 1.1.2 2023-01-06 [2] CRAN (R 4.6.0)
## genlasso 1.6.1 2022-08-22 [2] CRAN (R 4.6.0)
## GENLIB 1.1.10 2024-02-19 [2] CRAN (R 4.6.0)
## genomation 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genomationData 1.43.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## GenomAutomorphism 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomeInfoDb 1.47.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomeInfoDbData 1.2.15 2025-11-17 [2] Bioconductor
## genomeIntervals 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genomes 3.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genomewidesnp5Crlmm 1.0.6 2025-11-17 [2] local
## genomewidesnp6Crlmm 1.0.7 2025-11-17 [2] Bioconductor
## GenomicAlignments 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicDataCommons 1.35.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicDistributions 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicDistributionsData 1.19.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicFeatures 1.63.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicFiles 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## genomicInstability 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicInteractionNodes 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicInteractions 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicOZone 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicPlot 1.9.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicRanges 1.63.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicScores 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicState 0.99.17 2025-07-30 [2] Bioconductor 3.22 (R 4.6.0)
## GenomicSuperSignature 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenomicTools.fileHandler 0.1.5.9 2020-03-05 [2] CRAN (R 4.6.0)
## GenomicTuples 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenProSeq 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GenSA 1.1.15 2025-11-26 [2] CRAN (R 4.6.0)
## GenVisR 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeoDiff 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GEOexplorer 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GEOfastq 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GEOmetadb 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geomeTriD 1.5.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geometries 0.2.5 2025-11-23 [2] CRAN (R 4.6.0)
## geometry 0.5.2 2025-02-08 [2] CRAN (R 4.6.0)
## geomtextpath 0.2.0 2025-07-21 [2] CRAN (R 4.6.0)
## GeomxTools 3.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeoMxWorkflows 1.17.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## GEOquery 2.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geosphere 1.5-20 2024-10-04 [2] CRAN (R 4.6.0)
## GEOsubmission 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GeoTcgaData 2.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gep2pep 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gert 2.2.0 2025-11-16 [2] CRAN (R 4.6.0)
## getDEE2 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## getopt 1.20.4 2023-10-01 [2] CRAN (R 4.6.0)
## GetoptLong 1.1.0 2025-11-28 [2] CRAN (R 4.6.0)
## getPass 0.2-4 2023-12-10 [2] CRAN (R 4.6.0)
## GeuvadisTranscriptExpr 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## geva 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GEWIST 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## geyser 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GFA 1.0.5 2023-10-21 [2] CRAN (R 4.6.0)
## gg4way 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggalluvial 0.12.5 2023-02-22 [2] CRAN (R 4.6.0)
## GGally 2.4.0 2025-08-23 [2] CRAN (R 4.6.0)
## gganimate 1.0.11 2025-09-04 [2] CRAN (R 4.6.0)
## ggarchery 0.4.4 2025-07-24 [2] CRAN (R 4.6.0)
## ggbeeswarm 0.7.3 2025-11-29 [2] CRAN (R 4.6.0)
## ggbio 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggbump 0.1.0 2020-04-24 [2] CRAN (R 4.6.0)
## ggcorrplot 0.1.4.1 2023-09-05 [2] CRAN (R 4.6.0)
## ggcyto 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggdendro 0.2.0 2024-02-23 [2] CRAN (R 4.6.0)
## ggdensity 1.0.0 2023-02-09 [2] CRAN (R 4.6.0)
## ggdist 3.3.3 2025-04-23 [2] CRAN (R 4.6.0)
## ggeasy 0.1.6 2025-06-15 [2] CRAN (R 4.6.0)
## ggExtra 0.11.0 2025-09-01 [2] CRAN (R 4.6.0)
## ggfittext 0.10.2 2024-02-01 [2] CRAN (R 4.6.0)
## ggforce 0.5.0 2025-06-18 [2] CRAN (R 4.6.0)
## ggformula 1.0.0 2025-10-06 [2] CRAN (R 4.6.0)
## ggfortify 0.4.19 2025-07-27 [2] CRAN (R 4.6.0)
## ggfun 0.2.0 2025-07-15 [2] CRAN (R 4.6.0)
## gggenes 0.5.1 2023-09-05 [2] CRAN (R 4.6.0)
## ggh4x 0.3.1 2025-05-30 [2] CRAN (R 4.6.0)
## gghalves 0.1.4 2022-11-20 [2] CRAN (R 4.6.0)
## gghighlight 0.5.0 2025-06-14 [2] CRAN (R 4.6.0)
## ggHoriPlot 1.0.1 2022-10-11 [2] CRAN (R 4.6.0)
## ggimage 0.3.4 2025-08-24 [2] CRAN (R 4.6.0)
## gginnards 0.2.0-2 2025-11-12 [2] CRAN (R 4.6.0)
## ggiraph 0.9.2 2025-10-07 [2] CRAN (R 4.6.0)
## ggiraphExtra 0.3.0 2020-10-06 [2] CRAN (R 4.6.0)
## ggkegg 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggm 2.5.2 2025-07-25 [2] CRAN (R 4.6.0)
## ggmanh 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggmcmc 1.5.1.2 2025-10-02 [2] CRAN (R 4.6.0)
## ggmsa 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggnetwork 0.5.14 2025-09-10 [2] CRAN (R 4.6.0)
## ggnewscale 0.5.2 2025-06-20 [2] CRAN (R 4.6.0)
## GGPA 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggpattern 1.2.1 2025-08-27 [2] CRAN (R 4.6.0)
## ggplot.multistats 1.0.1 2024-09-25 [2] CRAN (R 4.6.0)
## ggplot2 4.0.1 2025-11-14 [2] CRAN (R 4.6.0)
## ggplotify 0.1.3 2025-09-20 [2] CRAN (R 4.6.0)
## ggpmisc 0.6.3 2025-11-29 [2] CRAN (R 4.6.0)
## ggpointdensity 0.2.1 2025-11-18 [2] CRAN (R 4.6.0)
## ggpp 0.5.9 2025-06-28 [2] CRAN (R 4.6.0)
## ggprism 1.0.7 2025-08-23 [2] CRAN (R 4.6.0)
## ggpubr 0.6.2 2025-10-17 [2] CRAN (R 4.6.0)
## ggraph 2.2.2 2025-08-24 [2] CRAN (R 4.6.0)
## ggrastr 1.0.2 2023-06-01 [2] CRAN (R 4.6.0)
## ggrepel 0.9.6 2024-09-07 [2] CRAN (R 4.6.0)
## ggridges 0.5.7 2025-08-27 [2] CRAN (R 4.6.0)
## ggsc 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggsci 4.1.0 2025-10-25 [2] CRAN (R 4.6.0)
## ggseqalign 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggseqlogo 0.2 2024-02-09 [2] CRAN (R 4.6.0)
## ggside 0.4.1 2025-11-25 [2] CRAN (R 4.6.0)
## ggsignif 0.6.4 2022-10-13 [2] CRAN (R 4.6.0)
## ggspavis 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggstance 0.3.7 2024-04-05 [2] CRAN (R 4.6.0)
## ggstar 1.0.6 2025-09-19 [2] CRAN (R 4.6.0)
## ggstats 0.11.0 2025-09-15 [2] CRAN (R 4.6.0)
## ggsurvfit 1.2.0 2025-09-13 [2] CRAN (R 4.6.0)
## ggtangle 0.0.9 2025-11-30 [2] CRAN (R 4.6.0)
## ggtext 0.1.2 2022-09-16 [2] CRAN (R 4.6.0)
## ggthemes 5.2.0 2025-11-30 [2] CRAN (R 4.6.0)
## ggtree 4.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggtreeDendro 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggtreeExtra 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggtreeSpace 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ggupset 0.4.1 2025-02-11 [2] CRAN (R 4.6.0)
## ggvenn 0.1.19 2025-10-08 [2] CRAN (R 4.6.0)
## ggVennDiagram 1.5.4 2025-06-21 [2] CRAN (R 4.6.0)
## ggvis 0.4.9 2024-02-05 [2] CRAN (R 4.6.0)
## ggwordcloud 0.6.2 2024-05-30 [2] CRAN (R 4.6.0)
## gh 1.5.0 2025-05-26 [2] CRAN (R 4.6.0)
## GIGSEA 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ginmappeR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gINTomics 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## git2r 0.36.2 2025-03-29 [2] CRAN (R 4.6.0)
## gitcreds 0.1.2 2022-09-08 [2] CRAN (R 4.6.0)
## GLAD 2.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GladiaTOX 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## glasso 1.11 2019-10-01 [2] CRAN (R 4.6.0)
## glassoFast 1.0.1 2023-08-21 [2] CRAN (R 4.6.0)
## gld 2.6.8 2025-09-14 [2] CRAN (R 4.6.0)
## Glimma 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## glm2 1.2.1 2018-08-11 [2] CRAN (R 4.6.0)
## glmGamPoi 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## glmmSeq 0.5.7 2025-10-02 [2] CRAN (R 4.6.0)
## glmmTMB 1.1.13 2025-10-09 [2] CRAN (R 4.6.0)
## glmnet 4.1-10 2025-07-17 [2] CRAN (R 4.6.0)
## glmnetUtils 1.1.9 2023-09-10 [2] CRAN (R 4.6.0)
## glmpca 0.2.0 2020-07-18 [2] CRAN (R 4.6.0)
## glmSparseNet 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GlobalAncova 4.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GlobalOptions 0.1.3 2025-11-28 [2] CRAN (R 4.6.0)
## globals 0.18.0 2025-05-08 [2] CRAN (R 4.6.0)
## globalSeq 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## globaltest 5.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GloScope 2.1.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## glpkAPI 1.3.4.1 2025-07-10 [2] CRAN (R 4.6.0)
## glue 1.8.0 2024-09-30 [2] CRAN (R 4.6.0)
## gmapR 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GmicR 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gmm 1.9-1 2025-08-26 [2] CRAN (R 4.6.0)
## gmodels 2.19.1 2024-03-06 [2] CRAN (R 4.6.0)
## gmoviz 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gmp 0.7-5 2024-08-23 [2] CRAN (R 4.6.0)
## GMRP 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GNET2 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gnm 1.1-5 2023-09-16 [2] CRAN (R 4.6.0)
## GNOSIS 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GO.db 3.22.0 2025-11-17 [2] Bioconductor
## goat 1.1.3 2025-08-27 [2] CRAN (R 4.6.0)
## goatea 1.1.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GOexpress 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GoFKernel 2.1-3 2024-12-06 [2] CRAN (R 4.6.0)
## goftest 1.2-3 2021-10-07 [2] CRAN (R 4.6.0)
## GOfuncR 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## golem 0.5.1 2024-08-27 [2] CRAN (R 4.6.0)
## golubEsets 1.53.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## googledrive 2.1.2 2025-09-10 [2] CRAN (R 4.6.0)
## googlesheets4 1.1.2 2025-09-03 [2] CRAN (R 4.6.0)
## googleVis 0.7.3 2024-05-25 [2] CRAN (R 4.6.0)
## GOpro 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## goProfiles 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GOSemSim 2.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## goseq 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## goSorensen 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## goSTAG 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GOstats 2.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GOTHiC 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## goTools 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gower 1.0.2 2024-12-17 [2] CRAN (R 4.6.0)
## GPA 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gpaExample 1.23.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## GPArotation 2025.3-1 2025-04-12 [2] CRAN (R 4.6.0)
## gplots 3.3.0 2025-11-30 [2] CRAN (R 4.6.0)
## gpls 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gProfileR 0.7.0 2019-11-04 [2] CRAN (R 4.6.0)
## gprofiler2 0.2.4 2025-11-11 [2] CRAN (R 4.6.0)
## GrafGen 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gRain 1.4.5 2024-10-17 [2] CRAN (R 4.6.0)
## GRaNIE 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## granulator 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## graper 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## graph 1.89.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GraphAlignment 1.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GraphAT 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## P graphics * 4.6.0 2025-10-21 [2] local
## graphite 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## graphlayouts 1.2.2 2025-01-23 [2] CRAN (R 4.6.0)
## grasp2db 1.1.1 2025-11-17 [2] local
## gRbase 2.0.3 2024-10-22 [2] CRAN (R 4.6.0)
## P grDevices * 4.6.0 2025-10-21 [2] local
## GRENITS 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GreyListChIP 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## grid 4.6.0 2025-10-21 [?] local
## gridBase 0.4-7 2014-02-24 [2] CRAN (R 4.6.0)
## gridExtra 2.3 2017-09-09 [2] CRAN (R 4.6.0)
## gridGraphics 0.5-1 2020-12-13 [2] CRAN (R 4.6.0)
## gridpattern 1.3.1 2025-01-16 [2] CRAN (R 4.6.0)
## gridSVG 1.7-7 2025-10-31 [2] CRAN (R 4.6.0)
## gridtext 0.1.5 2022-09-16 [2] CRAN (R 4.6.0)
## grImport 0.9-7 2023-03-09 [2] CRAN (R 4.6.0)
## grImport2 0.3-3 2024-07-30 [2] CRAN (R 4.6.0)
## GRmetrics 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## groHMM 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## groupdata2 2.0.5 2024-12-18 [2] CRAN (R 4.6.0)
## grpreg 3.5.0 2024-09-03 [2] CRAN (R 4.6.0)
## grr 0.9.5 2016-08-26 [2] CRAN (R 4.6.0)
## GSA 1.03.3 2024-04-20 [2] CRAN (R 4.6.0)
## GSALightning 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GSAR 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GSBenchMark 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## GSCA 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## GSE62944 1.39.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## GSEABase 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GSEABenchmarkeR 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GSEAlm 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GSEAmining 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## GSgalgoR 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## gsl 2.1-9 2025-11-10 [2] CRAN (R 4.6.0)
## gson 0.1.0 2023-03-07 [2] CRAN (R 4.6.0)
## GSReg 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GSRI 2.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gss 2.2-10 2025-11-19 [2] CRAN (R 4.6.0)
## gstat 2.1-4 2025-07-10 [2] CRAN (R 4.6.0)
## gsubfn 0.7 2018-03-16 [2] CRAN (R 4.6.0)
## GSVA 2.5.14 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GSVAdata 1.47.1 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## gt 1.1.0 2025-09-23 [2] CRAN (R 4.6.0)
## gtable 0.3.6 2024-10-25 [2] CRAN (R 4.6.0)
## gtools 3.9.5 2023-11-20 [2] CRAN (R 4.6.0)
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## GUIDEseq 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Guitar 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GUniFrac 1.9 2025-08-25 [2] CRAN (R 4.6.0)
## gVenn 1.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Gviz 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GWAS.BAYES 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## gwascat 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## GWASdata 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## GWASExactHW 1.2 2024-03-12 [2] CRAN (R 4.6.0)
## gwasrapidd 0.99.18 2025-05-31 [2] CRAN (R 4.6.0)
## GWASTools 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## GWENA 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## h5vc 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## h5vcData 2.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
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## hapmapsnp5 1.53.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## hapmapsnp6 1.53.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
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## Harman 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HarmanData 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## harmonicmeanp 3.0.1 2024-01-17 [2] CRAN (R 4.6.0)
## HarmonizR 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## harmony 1.2.4 2025-10-10 [2] CRAN (R 4.6.0)
## hash 2.2.6.3 2023-08-19 [2] CRAN (R 4.6.0)
## haven 2.5.5 2025-05-30 [2] CRAN (R 4.6.0)
## hca 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HCAData 1.27.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## HD2013SGI 1.51.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## HDCI 1.0-2 2017-06-06 [2] CRAN (R 4.6.0)
## HDCytoData 1.31.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## HDF5Array 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hdf5r 1.3.12 2025-01-20 [2] CRAN (R 4.6.0)
## HDInterval 0.2.4 2022-11-17 [2] CRAN (R 4.6.0)
## hdrcde 3.4 2021-01-18 [2] CRAN (R 4.6.0)
## HDTD 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hdxmsqc 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## healthyFlowData 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
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## heatmaply 1.6.0 2025-07-12 [2] CRAN (R 4.6.0)
## heatmaps 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Heatplus 3.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HEEBOdata 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## HelloRanges 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HelloRangesData 1.37.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## HELP 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HEM 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## henna 0.3.4 2025-10-19 [2] CRAN (R 4.6.0)
## here 1.0.2 2025-09-15 [2] CRAN (R 4.6.0)
## hermes 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HERON 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Herper 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hexbin 1.28.5 2024-11-13 [2] CRAN (R 4.6.0)
## hexDensity 1.4.10 2025-09-28 [2] CRAN (R 4.6.0)
## HGC 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hgfocuscdf 2.18.0 2025-11-17 [2] Bioconductor
## hgfocusprobe 2.18.0 2025-11-17 [2] Bioconductor
## HGNChelper 0.8.15 2024-11-16 [2] CRAN (R 4.6.0)
## hgu133a.db 3.13.0 2025-11-17 [2] Bioconductor
## hgu133a2.db 3.13.0 2025-11-17 [2] Bioconductor
## hgu133acdf 2.18.0 2025-11-17 [2] Bioconductor
## hgu133afrmavecs 1.5.0 2025-11-17 [2] Bioconductor
## hgu133aprobe 2.18.0 2025-11-17 [2] Bioconductor
## hgu133atagcdf 2.18.0 2025-11-17 [2] Bioconductor
## hgu133atagprobe 2.18.0 2025-11-17 [2] Bioconductor
## hgu133plus2.db 3.13.0 2025-11-17 [2] Bioconductor
## hgu133plus2cdf 2.18.0 2025-11-17 [2] Bioconductor
## hgu133plus2probe 2.18.0 2025-11-17 [2] Bioconductor
## hgu95acdf 2.18.0 2025-11-17 [2] Bioconductor
## hgu95av2 2.2.0 2025-11-17 [2] Bioconductor
## hgu95av2.db 3.13.0 2025-11-17 [2] Bioconductor
## hgu95av2cdf 2.18.0 2025-11-17 [2] Bioconductor
## hgu95av2probe 2.18.0 2025-11-17 [2] Bioconductor
## HIBAG 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HicAggR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCaptuRe 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCBricks 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCcompare 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCDataHumanIMR90 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## HiCDataLymphoblast 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## HiCDCPlus 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCDOC 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCExperiment 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiContacts 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiContactsData 1.13.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## HiCool 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCParser 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiCPotts 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hicVennDiagram 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiddenMarkov 1.8-14 2025-01-28 [2] CRAN (R 4.6.0)
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## hierinf 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## highcharter 0.9.4 2022-01-03 [2] CRAN (R 4.6.0)
## highr 0.11 2024-05-26 [2] CRAN (R 4.6.0)
## HilbertCurve 2.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HilbertVis 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiLDA 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hipathia 3.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HIPPO 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HIREewas 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hitandrun 0.5-6 2022-05-27 [2] CRAN (R 4.6.0)
## HiTC 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HiveR 0.4.0 2024-07-18 [2] CRAN (R 4.6.0)
## hmdbQuery 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Hmisc 5.2-4 2025-10-05 [2] CRAN (R 4.6.0)
## HMM 1.0.2 2025-05-16 [2] CRAN (R 4.6.0)
## HMMcopy 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HMP 2.0.1 2019-08-31 [2] CRAN (R 4.6.0)
## hms 1.1.4 2025-10-17 [2] CRAN (R 4.6.0)
## HoloFoodR 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Homo.sapiens 1.3.1 2025-11-17 [2] Bioconductor
## homologene 1.4.68.19.3.27 2019-03-28 [2] CRAN (R 4.6.0)
## hoodscanR 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hopach 2.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HPAanalyze 1.29.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hpar 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HPiP 1.17.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HSMMSingleCell 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## htm2txt 2.2.2 2022-06-12 [2] CRAN (R 4.6.0)
## htmlTable 2.4.3 2024-07-21 [2] CRAN (R 4.6.0)
## htmltools 0.5.9 2025-12-04 [2] CRAN (R 4.6.0)
## HTMLUtils 0.1.9 2024-01-25 [2] CRAN (R 4.6.0)
## htmlwidgets 1.6.4 2023-12-06 [2] CRAN (R 4.6.0)
## HTqPCR 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HTSCluster 2.0.11 2023-09-05 [2] CRAN (R 4.6.0)
## HTSFilter 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## httpcode 0.3.0 2020-04-10 [2] CRAN (R 4.6.0)
## httptest 4.2.3 2025-11-15 [2] CRAN (R 4.6.0)
## httptest2 1.2.2 2025-11-16 [2] CRAN (R 4.6.0)
## httpuv 1.6.16 2025-04-16 [2] CRAN (R 4.6.0)
## httr 1.4.7 2023-08-15 [2] CRAN (R 4.6.0)
## httr2 1.2.2 2025-12-08 [2] CRAN (R 4.6.0)
## hu6800.db 3.13.0 2025-11-17 [2] Bioconductor
## HuBMAPR 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HubPub 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hues 0.2.0 2019-12-01 [2] CRAN (R 4.6.0)
## huge 1.3.5 2021-06-30 [2] CRAN (R 4.6.0)
## hugene10sttranscriptcluster.db 8.8.0 2025-11-18 [2] Bioconductor
## human.db0 3.22.0 2025-11-17 [2] Bioconductor
## human370v1cCrlmm 1.0.2 2025-11-17 [2] Bioconductor
## human610quadv1bCrlmm 1.0.3 2025-11-17 [2] Bioconductor
## HumanAffyData 1.37.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## humanCHRLOC 2.1.6 2025-11-17 [2] Bioconductor
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## hummingbird 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## HVP 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## hwriter 1.3.2.1 2022-04-08 [2] CRAN (R 4.6.0)
## HybridExpress 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## HybridMTest 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## hypergraph 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iASeq 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iasva 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iBBiG 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Ibex 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ibh 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## iCARE 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
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## Icens 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## icetea 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iCheck 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iChip 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iClusterPlus 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iCNV 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iCOBRA 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ICS 1.4-2 2025-03-18 [2] CRAN (R 4.6.0)
## ICSNP 1.1-2 2023-09-18 [2] CRAN (R 4.6.0)
## ideal 2.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IdeoViz 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## idiogram 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IDPmisc 1.1.21 2024-02-08 [2] CRAN (R 4.6.0)
## idpr 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## idr 1.3 2022-06-21 [2] CRAN (R 4.6.0)
## idr2d 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ids 1.0.1 2017-05-31 [2] CRAN (R 4.6.0)
## ieugwasr 1.1.0 2025-07-31 [2] CRAN (R 4.6.0)
## IFAA 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## igblastr 1.1.5 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iGC 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IgGeneUsage 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## igraph 2.2.1 2025-10-27 [2] CRAN (R 4.6.0)
## igraphdata 1.0.1 2015-07-13 [2] CRAN (R 4.6.0)
## igvR 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## igvShiny 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IHW 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ijtiff 3.1.3 2025-04-05 [2] CRAN (R 4.6.0)
## Illumina450ProbeVariants.db 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## IlluminaDataTestFiles 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## IlluminaHumanMethylation450kanno.ilmn12.hg19 0.6.1 2025-11-17 [2] Bioconductor
## IlluminaHumanMethylation450kmanifest 0.4.0 2025-11-17 [2] Bioconductor
## IlluminaHumanMethylationEPICanno.ilm10b2.hg19 0.6.0 2025-11-17 [2] Bioconductor
## IlluminaHumanMethylationEPICanno.ilm10b4.hg19 0.6.0 2025-11-17 [2] Bioconductor
## IlluminaHumanMethylationEPICmanifest 0.3.0 2025-11-17 [2] Bioconductor
## IlluminaHumanMethylationEPICv2anno.20a1.hg38 1.0.0 2025-11-17 [2] Bioconductor
## IlluminaHumanMethylationEPICv2manifest 1.0.0 2025-11-17 [2] Bioconductor
## illuminaHumanv1.db 1.26.0 2025-11-17 [2] Bioconductor
## illuminaHumanv3.db 1.26.0 2025-11-17 [2] Bioconductor
## illuminaHumanv4.db 1.26.0 2025-11-17 [2] Bioconductor
## illuminaio 0.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ILoReg 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## imager 1.0.5 2025-08-02 [2] CRAN (R 4.6.0)
## imageTCGA 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IMAS 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## imcdatasets 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## imcRtools 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iml 0.11.4 2025-02-24 [2] CRAN (R 4.6.0)
## IMMAN 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## immApex 1.5.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## immReferent 0.99.5 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## immunoClust 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## immunogenViewer 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## immunotation 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iModMix 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iModMixData 1.1.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## imp4p 1.2 2021-09-02 [2] CRAN (R 4.6.0)
## IMPCdata 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## import 1.3.4 2025-10-19 [2] CRAN (R 4.6.0)
## impute 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## imputeLCMD 2.1 2022-06-10 [2] CRAN (R 4.6.0)
## inaparc 1.2.1 2025-09-14 [2] CRAN (R 4.6.0)
## INDEED 2.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ineq 0.2-13 2014-07-21 [2] CRAN (R 4.6.0)
## iNETgrate 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## INetTool 0.1.1 2025-06-19 [2] CRAN (R 4.6.0)
## iNEXT 3.0.2 2025-07-30 [2] CRAN (R 4.6.0)
## infercnv 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## infinityFlow 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## inflection 1.3.7 2025-07-17 [2] CRAN (R 4.6.0)
## Informeasure 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## infotheo 1.2.0.1 2022-04-08 [2] CRAN (R 4.6.0)
## ini 0.3.1 2018-05-20 [2] CRAN (R 4.6.0)
## inline 0.3.21 2025-01-09 [2] CRAN (R 4.6.0)
## InPAS 2.19.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## INPower 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## insight 1.4.4 2025-12-06 [2] CRAN (R 4.6.0)
## INSPEcT 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## instantiate 0.2.3 2024-10-02 [2] CRAN (R 4.6.0)
## INTACT 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## InTAD 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## intansv 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## interacCircos 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## InteractionSet 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## InteractiveComplexHeatmap 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## InterCellar 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IntEREst 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## intergraph 2.0-4 2024-02-01 [2] CRAN (R 4.6.0)
## interp 1.1-6 2024-01-26 [2] CRAN (R 4.6.0)
## intervals 0.15.5 2024-08-23 [2] CRAN (R 4.6.0)
## IntramiRExploreR 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## intrinsicDimension 1.2.0 2019-06-07 [2] CRAN (R 4.6.0)
## inum 1.0-5 2023-03-09 [2] CRAN (R 4.6.0)
## InvariantCausalPrediction 0.8 2019-11-10 [2] CRAN (R 4.6.0)
## invgamma 1.2 2025-07-02 [2] CRAN (R 4.6.0)
## IONiseR 2.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iPath 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ipdDb 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IPO 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ipred 0.9-15 2024-07-18 [2] CRAN (R 4.6.0)
## IRanges 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IRdisplay 1.1 2022-01-04 [2] CRAN (R 4.6.0)
## IRkernel 1.3.2 2023-01-20 [2] CRAN (R 4.6.0)
## irlba 2.3.5.1 2022-10-03 [2] CRAN (R 4.6.0)
## irr 0.84.1 2019-01-26 [2] CRAN (R 4.6.0)
## isa2 0.3.6 2023-02-21 [2] CRAN (R 4.6.0)
## ISAnalytics 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEE 2.23.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEde 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEfier 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEhex 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEhub 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEindex 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEpathways 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEtree 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSEEu 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iSeq 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ISLET 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## islify 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Iso 0.0-21 2023-10-02 [2] CRAN (R 4.6.0)
## isoband 0.3.0 2025-12-07 [2] CRAN (R 4.6.0)
## isobar 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IsoBayes 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ISOcodes 2025.05.18 2025-05-18 [2] CRAN (R 4.6.0)
## IsoCorrectoR 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IsoCorrectoRGUI 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IsoformSwitchAnalyzeR 2.11.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ISoLDE 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## isomiRs 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## isotree 0.6.1-4 2025-01-08 [2] CRAN (R 4.6.0)
## isva 1.9 2017-01-14 [2] CRAN (R 4.6.0)
## ITALICS 2.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ITALICSData 2.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## iterativeBMA 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iterativeBMAsurv 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## iterators 1.0.14 2022-02-05 [2] CRAN (R 4.6.0)
## itertools 0.1-3 2014-03-12 [2] CRAN (R 4.6.0)
## IVAS 2.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ivygapSE 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## IWTomics 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## JADE 2.0-4 2023-09-17 [2] CRAN (R 4.6.0)
## janeaustenr 1.0.0 2022-08-26 [2] CRAN (R 4.6.0)
## janitor 2.2.1 2024-12-22 [2] CRAN (R 4.6.0)
## JASPAR2014 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## JASPAR2016 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## JASPAR2018 1.1.1 2025-11-17 [2] Bioconductor
## JASPAR2020 0.99.10 2025-11-17 [2] Bioconductor
## JASPAR2022 0.99.8 2024-02-28 [2] Bioconductor 3.19 (R 4.6.0)
## JASPAR2024 0.99.7 2024-11-13 [2] Bioconductor 3.21 (R 4.6.0)
## jazzPanda 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## jomo 2.7-6 2023-04-15 [2] CRAN (R 4.6.0)
## jose 1.2.1 2024-10-04 [2] CRAN (R 4.6.0)
## jpeg 0.1-11 2025-03-21 [2] CRAN (R 4.6.0)
## jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.6.0)
## jsonlite 2.0.0 2025-03-27 [2] CRAN (R 4.6.0)
## jsonvalidate 1.5.0 2025-02-07 [2] CRAN (R 4.6.0)
## juicyjuice 0.1.0 2022-11-10 [2] CRAN (R 4.6.0)
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## katdetectr 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## KBoost 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## KCsmart 2.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## kde1d 1.1.1 2025-06-12 [2] CRAN (R 4.6.0)
## kebabs 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## KEGGandMetacoreDzPathwaysGEO 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## KEGGdzPathwaysGEO 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## KEGGgraph 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## KEGGlincs 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## keggorthology 2.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## KEGGREST 1.51.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Kendall 2.2.1 2022-03-20 [2] CRAN (R 4.6.0)
## keras 2.16.0 2025-08-18 [2] CRAN (R 4.6.0)
## KernelKnn 1.1.6 2025-09-15 [2] CRAN (R 4.6.0)
## kernelshap 0.9.1 2025-09-20 [2] CRAN (R 4.6.0)
## kernlab 0.9-33 2024-08-13 [2] CRAN (R 4.6.0)
## KernSmooth 2.23-26 2025-01-01 [2] CRAN (R 4.6.0)
## kerntools 1.2.0 2025-02-19 [2] CRAN (R 4.6.0)
## keys 0.1.1 2021-07-11 [2] CRAN (R 4.6.0)
## kinship2 1.9.6.2 2025-09-04 [2] CRAN (R 4.6.0)
## KinSwingR 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## kissDE 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## kknn 1.4.1 2025-05-19 [2] CRAN (R 4.6.0)
## klaR 1.7-3 2023-12-13 [2] CRAN (R 4.6.0)
## km.ci 0.5-6 2022-04-06 [2] CRAN (R 4.6.0)
## kmcut 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## kmer 1.1.2 2019-05-20 [2] CRAN (R 4.6.0)
## KMsurv 0.1-6 2025-05-20 [2] CRAN (R 4.6.0)
## knitcitations 1.0.12 2021-01-10 [2] CRAN (R 4.6.0)
## knitr 1.50 2025-03-16 [2] CRAN (R 4.6.0)
## knitrBootstrap 1.0.4 2025-12-08 [2] CRAN (R 4.6.0)
## knn.covertree 1.1 2025-12-08 [2] CRAN (R 4.6.0)
## knnmi 1.0 2024-04-02 [2] CRAN (R 4.6.0)
## KnowSeq 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## knowYourCG 1.7.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## KOdata 1.37.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## kohonen 3.0.12 2023-06-09 [2] CRAN (R 4.6.0)
## koinar 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## koRpus 0.13-8 2021-05-17 [2] CRAN (R 4.6.0)
## koRpus.lang.en 0.1-4 2020-10-24 [2] CRAN (R 4.6.0)
## kpeaks 1.1.0 2020-02-08 [2] CRAN (R 4.6.0)
## kriging 1.2 2022-06-24 [2] CRAN (R 4.6.0)
## ks 1.15.1 2025-05-04 [2] CRAN (R 4.6.0)
## kSamples 1.2-12 2025-08-26 [2] CRAN (R 4.6.0)
## labdsv 2.1-2 2025-07-31 [2] CRAN (R 4.6.0)
## labeling 0.4.3 2023-08-29 [2] CRAN (R 4.6.0)
## labelled 2.16.0 2025-10-22 [2] CRAN (R 4.6.0)
## LACE 2.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LACHESIS 0.99.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## laeken 0.5.3 2024-01-25 [2] CRAN (R 4.6.0)
## lambda.r 1.2.4 2019-09-18 [2] CRAN (R 4.6.0)
## LambertW 0.6.9-2 2025-08-21 [2] CRAN (R 4.6.0)
## lamW 2.2.5 2025-07-08 [2] CRAN (R 4.6.0)
## LaplacesDemon 16.1.6 2021-07-09 [2] CRAN (R 4.6.0)
## lars 1.3 2022-04-13 [2] CRAN (R 4.6.0)
## later 1.4.4 2025-08-27 [2] CRAN (R 4.6.0)
## latex2exp 0.9.6 2022-11-28 [2] CRAN (R 4.6.0)
## lattice 0.22-7 2025-04-02 [2] CRAN (R 4.6.0)
## latticeExtra 0.6-31 2025-09-10 [2] CRAN (R 4.6.0)
## lava 1.8.2 2025-10-30 [2] CRAN (R 4.6.0)
## lavaan 0.6-20 2025-09-21 [2] CRAN (R 4.6.0)
## lazyeval 0.2.2 2019-03-15 [2] CRAN (R 4.6.0)
## LBE 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lbfgs 1.2.1.2 2022-06-23 [2] CRAN (R 4.6.0)
## ldblock 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LDlinkR 1.4.0 2024-04-10 [2] CRAN (R 4.6.0)
## LEA 3.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## leaflet 2.2.3 2025-09-04 [2] CRAN (R 4.6.0)
## leaflet.providers 2.0.0 2023-10-17 [2] CRAN (R 4.6.0)
## leapR 0.99.5 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## leaps 3.2 2024-06-10 [2] CRAN (R 4.6.0)
## LearnBayes 2.15.1 2018-03-18 [2] CRAN (R 4.6.0)
## learnr 0.11.6 2025-11-13 [2] CRAN (R 4.6.0)
## LedPred 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## leeBamViews 1.47.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## lefser 1.21.7 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## leiden 0.4.3.1 2023-11-17 [2] CRAN (R 4.6.0)
## leidenAlg 1.1.5 2025-04-19 [2] CRAN (R 4.6.0)
## leidenbase 0.1.35 2025-04-02 [2] CRAN (R 4.6.0)
## lemur 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## les 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## leukemiasEset 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## levi 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lexicon 1.2.1 2019-03-21 [2] CRAN (R 4.6.0)
## lfa 2.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lfda 1.1.3 2019-07-31 [2] CRAN (R 4.6.0)
## lgr 0.5.0 2025-07-23 [2] CRAN (R 4.6.0)
## Lheuristic 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lhs 1.2.0 2024-06-30 [2] CRAN (R 4.6.0)
## libcoin 1.0-10 2023-09-27 [2] CRAN (R 4.6.0)
## LiblineaR 2.10-24 2024-09-13 [2] CRAN (R 4.6.0)
## lifecycle 1.0.4 2023-11-07 [2] CRAN (R 4.6.0)
## liftOver 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## lime 0.5.3 2022-08-19 [2] CRAN (R 4.6.0)
## limma 3.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## limmaGUI 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## limpa 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## limpca 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LimROTS 1.3.15 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## limSolve 2.0.1 2025-06-24 [2] CRAN (R 4.6.0)
## lineagespot 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LinkHD 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## linkSet 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Linnorm 2.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## linprog 0.9-4 2022-03-09 [2] CRAN (R 4.6.0)
## lintr 3.3.0-1 2025-11-27 [2] CRAN (R 4.6.0)
## lionessR 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lipidr 2.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LipidTrend 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lisaClust 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## listenv 0.10.0 2025-11-02 [2] CRAN (R 4.6.0)
## listviewer 4.0.0 2023-09-30 [2] CRAN (R 4.6.0)
## litedown 0.8 2025-11-02 [2] CRAN (R 4.6.0)
## liver 1.26 2025-11-26 [2] CRAN (R 4.6.0)
## lmdme 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lme4 1.1-38 2025-12-02 [2] CRAN (R 4.6.0)
## lmerTest 3.1-3 2020-10-23 [2] CRAN (R 4.6.0)
## lmodel2 1.7-4 2024-12-05 [2] CRAN (R 4.6.0)
## lmom 3.2 2024-09-30 [2] CRAN (R 4.6.0)
## Lmoments 1.3-2 2025-09-18 [2] CRAN (R 4.6.0)
## lmtest 0.9-40 2022-03-21 [2] CRAN (R 4.6.0)
## LOBSTAHS 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lobstr 1.1.3 2025-11-14 [2] CRAN (R 4.6.0)
## locfdr 1.1-8 2015-07-15 [2] CRAN (R 4.6.0)
## locfit 1.5-9.12 2025-03-05 [2] CRAN (R 4.6.0)
## loci2path 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## locStra 1.9 2022-04-12 [2] CRAN (R 4.6.0)
## log4r 0.4.4 2024-10-12 [2] CRAN (R 4.6.0)
## logger 0.4.1 2025-09-11 [2] CRAN (R 4.6.0)
## logging 0.10-108 2019-07-14 [2] CRAN (R 4.6.0)
## logicFS 2.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LogicReg 1.6.6 2023-08-08 [2] CRAN (R 4.6.0)
## logistf 1.26.1 2025-04-16 [2] CRAN (R 4.6.0)
## logitnorm 0.8.39 2024-01-24 [2] CRAN (R 4.6.0)
## logNormReg 0.5-0 2021-11-08 [2] CRAN (R 4.6.0)
## logr 1.3.9 2025-03-26 [2] CRAN (R 4.6.0)
## lokern 1.1-12 2024-07-30 [2] CRAN (R 4.6.0)
## LOLA 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## longitudinal 1.1.13 2021-11-13 [2] CRAN (R 4.6.0)
## loo 2.8.0 2024-07-03 [2] CRAN (R 4.6.0)
## looking4clusters 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LoomExperiment 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LPE 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lpNet 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lpSolve 5.6.23 2024-12-14 [2] CRAN (R 4.6.0)
## lpSolveAPI 5.5.2.0-17.14 2025-04-14 [2] CRAN (R 4.6.0)
## lpsymphony 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LRBaseDbi 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LRcell 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LRcellTypeMarkers 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## lsa 0.73.3 2022-05-09 [2] CRAN (R 4.6.0)
## LSD 4.1-0 2020-06-17 [2] CRAN (R 4.6.0)
## lsr 0.5.2 2021-12-01 [2] CRAN (R 4.6.0)
## lubridate 1.9.4 2024-12-08 [2] CRAN (R 4.6.0)
## lumi 2.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## lumiBarnes 1.51.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## lumiHumanAll.db 1.22.0 2025-11-17 [2] Bioconductor
## lumiHumanIDMapping 1.10.1 2025-11-17 [2] Bioconductor
## LungCancerACvsSCCGEO 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## LungCancerLines 0.49.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## lungExpression 0.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## lwgeom 0.2-14 2024-02-21 [2] CRAN (R 4.6.0)
## LymphoSeq 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## LymphoSeqDB 0.99.2 2025-11-17 [2] Bioconductor
## M3C 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## M3DExampleData 1.37.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## M3Drop 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## m6Aboost 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Maaslin2 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maaslin3 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Macarron 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maCorrPlot 1.81.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## macrophage 1.27.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MACSdata 1.19.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MACSQuantifyR 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MACSr 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## made4 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maEndToEnd 2.31.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## MafDb.1Kgenomes.phase1.hs37d5 3.10.0 2025-11-17 [2] Bioconductor
## MafDb.1Kgenomes.phase3.GRCh38 3.10.0 2025-11-17 [2] Bioconductor
## MafDb.1Kgenomes.phase3.hs37d5 3.10.0 2025-11-17 [2] Bioconductor
## MafDb.ExAC.r1.0.hs37d5 3.10.0 2025-11-17 [2] Bioconductor
## MafDb.gnomADex.r2.1.hs37d5 3.10.0 2025-11-17 [2] Bioconductor
## MafH5.gnomAD.v4.0.GRCh38 3.19.0 2025-11-17 [2] Bioconductor
## maftools 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MAGAR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## magic 1.6-1 2022-11-16 [2] CRAN (R 4.6.0)
## magicaxis 2.5.1 2025-09-02 [2] CRAN (R 4.6.0)
## magick 2.9.0 2025-09-08 [2] CRAN (R 4.6.0)
## magpie 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## magrene 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## magrittr 2.0.4 2025-09-12 [2] CRAN (R 4.6.0)
## MAI 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MAIT 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## makecdfenv 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MALDIquant 1.22.3 2024-08-19 [2] CRAN (R 4.6.0)
## manipulateWidget 0.11.1 2021-10-05 [2] CRAN (R 4.6.0)
## MANOR 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MantelCorr 1.81.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MAPFX 1.7.0 2025-11-28 [2] Bioconductor 3.23 (R 4.6.0)
## mapplots 1.5.3 2025-06-26 [2] CRAN (R 4.6.0)
## mapproj 1.2.12 2025-05-19 [2] CRAN (R 4.6.0)
## maPredictDSC 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maps 3.4.3 2025-05-26 [2] CRAN (R 4.6.0)
## mapscape 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maptree 1.4-9 2025-07-22 [2] CRAN (R 4.6.0)
## maqcExpression4plex 1.55.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MAQCsubset 1.49.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## margins 0.3.28 2024-07-31 [2] CRAN (R 4.6.0)
## mariner 1.11.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## marinerData 1.11.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## markdown 2.0 2025-03-23 [2] CRAN (R 4.6.0)
## markeR 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## marr 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## marray 1.89.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## martini 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maser 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mashr 0.2.79 2023-10-18 [2] CRAN (R 4.6.0)
## maSigPro 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maskBAD 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MASS 7.3-65 2025-02-28 [2] CRAN (R 4.6.0)
## MassArray 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## massiR 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MassSpecWavelet 1.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MAST 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mastR 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## matchBox 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## matchingR 2.0.0 2025-09-23 [2] CRAN (R 4.6.0)
## MatchIt 4.7.2 2025-05-30 [2] CRAN (R 4.6.0)
## mathjaxr 2.0-0 2025-12-01 [2] CRAN (R 4.6.0)
## matlab 1.0.4.1 2024-07-01 [2] CRAN (R 4.6.0)
## Matrix 1.7-4 2025-08-28 [2] CRAN (R 4.6.0)
## matrixcalc 1.0-6 2022-09-14 [2] CRAN (R 4.6.0)
## MatrixCorrelation 0.10.1 2025-07-28 [2] CRAN (R 4.6.0)
## MatrixEQTL 2.3 2019-12-22 [2] CRAN (R 4.6.0)
## MatrixExtra 0.1.15 2024-01-22 [2] CRAN (R 4.6.0)
## MatrixGenerics 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MatrixModels 0.5-4 2025-03-26 [2] CRAN (R 4.6.0)
## MatrixQCvis 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MatrixRider 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## matrixStats 1.5.0 2025-01-07 [2] CRAN (R 4.6.0)
## matrixTests 0.2.3.1 2025-10-17 [2] CRAN (R 4.6.0)
## matter 2.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## maxLik 1.5-2.1 2024-03-24 [2] CRAN (R 4.6.0)
## maxstat 0.7-26 2025-05-02 [2] CRAN (R 4.6.0)
## MBA 0.1-2 2024-09-23 [2] CRAN (R 4.6.0)
## MBAmethyl 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MBASED 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MBCB 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MBECS 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mbest 0.6.1 2025-04-24 [2] CRAN (R 4.6.0)
## mbkmeans 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mboost 2.9-11 2024-08-22 [2] CRAN (R 4.6.0)
## mBPCR 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MBQN 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mbQTL 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MBttest 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MCbiclust 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mcbiopi 1.1.6 2018-10-06 [2] CRAN (R 4.6.0)
## MCL 1.0 2015-03-11 [2] CRAN (R 4.6.0)
## mclust 6.1.2 2025-10-31 [2] CRAN (R 4.6.0)
## mclustcomp 0.3.5 2025-09-22 [2] CRAN (R 4.6.0)
## mcmc 0.9-8 2023-11-16 [2] CRAN (R 4.6.0)
## MCMCglmm 2.36 2024-05-06 [2] CRAN (R 4.6.0)
## MCMCpack 1.7-1 2024-08-27 [2] CRAN (R 4.6.0)
## MCMCprecision 0.4.2 2025-07-22 [2] CRAN (R 4.6.0)
## mco 1.17 2024-08-19 [2] CRAN (R 4.6.0)
## mcprogress 0.1.1 2024-09-26 [2] CRAN (R 4.6.0)
## mcr 1.3.3.1 2024-09-23 [2] CRAN (R 4.6.0)
## mCSEA 1.31.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mCSEAdata 1.31.1 2025-11-11 [2] Bioconductor 3.23 (R 4.6.0)
## mdendro 2.2.3 2025-09-04 [2] CRAN (R 4.6.0)
## mdp 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mdqc 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MDTS 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MEAL 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MeasurementError.cor 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MEAT 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MEB 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mediation 4.5.1 2025-06-07 [2] CRAN (R 4.6.0)
## MEDIPS 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MEDIPSData 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MEDME 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MEEBOdata 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## mefa 3.2-10 2025-07-13 [2] CRAN (R 4.6.0)
## megadepth 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MEIGOR 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Melissa 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## memes 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## memoise 2.0.1 2021-11-26 [2] CRAN (R 4.6.0)
## memuse 4.2-3 2023-01-24 [2] CRAN (R 4.6.0)
## Mergeomics 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MeSHDbi 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## meshes 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## meshr 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MesKit 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## messina 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## meta 8.2-1 2025-09-01 [2] CRAN (R 4.6.0)
## metabCombiner 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metabinR 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetaboAnnotation 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetaboCoreUtils 1.19.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetaboDynamics 2.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metaboliteIDmapping 1.0.0 2025-11-17 [2] Bioconductor
## metabolomicsWorkbenchR 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metabomxtr 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetaboSignal 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metaCCA 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetaCycle 1.2.0 2019-04-18 [2] CRAN (R 4.6.0)
## MetaCyto 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metadat 1.4-0 2025-02-04 [2] CRAN (R 4.6.0)
## MetaDICT 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metafor 4.8-0 2025-01-28 [2] CRAN (R 4.6.0)
## metagene2 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metagenomeSeq 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metahdep 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metaMS 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metaMSdata 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MetaNeighbor 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metap 1.12 2025-03-15 [2] CRAN (R 4.6.0)
## MetaPhOR 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metapod 1.19.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metapone 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metaRNASeq 1.0.8 2025-03-26 [2] CRAN (R 4.6.0)
## metaSeq 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metaseqR2 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetBrewer 0.2.0 2022-03-21 [2] CRAN (R 4.6.0)
## MetCirc 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methimpute 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methInheritSim 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methodical 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## P methods * 4.6.0 2025-10-21 [2] local
## MethPed 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MethReg 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methrix 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MethTargetedNGS 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MethylAid 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MethylAidData 1.43.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## methylationArrayAnalysis 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## methylCC 1.25.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylclock 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylclockData 1.19.0 2025-11-11 [2] Bioconductor 3.23 (R 4.6.0)
## methylGSA 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methyLImp2 1.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylInheritance 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylKit 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MethylMix 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylMnM 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylPipe 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylscaper 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MethylSeekR 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylSig 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## methylumi 2.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetID 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetMashR 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MetNet 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## metR 0.18.3 2025-12-09 [2] CRAN (R 4.6.0)
## metrica 2.1.0 2024-06-30 [2] CRAN (R 4.6.0)
## Metrics 0.1.4 2018-07-09 [2] CRAN (R 4.6.0)
## mets 1.3.8 2025-10-21 [2] CRAN (R 4.6.0)
## mfa 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Mfuzz 2.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mgcv 1.9-4 2025-11-07 [2] CRAN (R 4.6.0)
## MGFM 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MGFR 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MGLM 0.2.1 2022-04-13 [2] CRAN (R 4.6.0)
## mgsa 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mgsub 1.7.3 2021-07-28 [2] CRAN (R 4.6.0)
## mhsmm 0.4.21 2023-08-23 [2] CRAN (R 4.6.0)
## mia 1.19.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miaDash 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miaSim 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miaTime 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miaViz 1.19.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mice 3.19.0 2025-12-10 [2] CRAN (R 4.6.0)
## miceadds 3.18-36 2025-09-12 [2] CRAN (R 4.6.0)
## MiChip 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## microbenchmark 1.5.0 2024-09-04 [2] CRAN (R 4.6.0)
## microbiome 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## microbiomeDASim 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## microbiomeDataSets 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## microbiomeExplorer 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MicrobiomeProfiler 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MicrobiomeStat 1.2 2024-04-01 [2] CRAN (R 4.6.0)
## MicrobiotaProcess 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## microRNA 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## microSTASIS 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MICSQTL 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## midasHLA 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miloR 2.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mimager 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mime 0.13 2025-03-17 [2] CRAN (R 4.6.0)
## mina 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MineICA 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## minerva 1.5.10 2021-06-17 [2] CRAN (R 4.6.0)
## minet 3.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## minfi 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## minfiData 0.57.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## minfiDataEPIC 1.37.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## MinimumDistance 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## minionSummaryData 1.41.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## miniUI 0.1.2 2025-04-17 [2] CRAN (R 4.6.0)
## minpack.lm 1.2-4 2023-09-11 [2] CRAN (R 4.6.0)
## minqa 1.2.8 2024-08-17 [2] CRAN (R 4.6.0)
## minty 0.0.5 2025-01-07 [2] CRAN (R 4.6.0)
## MiPP 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miQC 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MIRA 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MiRaGE 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mirai 2.5.3 2025-12-01 [2] CRAN (R 4.6.0)
## miRBaseConverter 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miRBaseVersions.db 1.1.0 2025-11-17 [2] Bioconductor
## miRcomp 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miRcompData 1.41.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## mirIntegrator 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MIRit 1.7.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miRLAB 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mirna10cdf 2.18.0 2025-11-17 [2] Bioconductor
## miRNAmeConverter 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miRNApath 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miRNAtap 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miRNAtap.db 0.99.10 2025-11-17 [2] Bioconductor
## miRNATarget 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## miRSM 2.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## miRspongeR 2.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mirTarRnaSeq 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## misc3d 0.9-1 2021-10-07 [2] CRAN (R 4.6.0)
## miscTools 0.6-28 2023-05-03 [2] CRAN (R 4.6.0)
## missForest 1.6.1 2025-10-26 [2] CRAN (R 4.6.0)
## missMDA 1.20 2025-07-23 [2] CRAN (R 4.6.0)
## missMethyl 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## missRows 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mist 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mistyR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mitch 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mitml 0.4-5 2023-03-08 [2] CRAN (R 4.6.0)
## mitoClone2 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mitology 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mitools 2.4 2019-04-26 [2] CRAN (R 4.6.0)
## mixOmics 6.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mixsmsn 1.1-11 2025-04-23 [2] CRAN (R 4.6.0)
## mixsqp 0.3-54 2023-12-20 [2] CRAN (R 4.6.0)
## mixtools 2.0.0.1 2025-03-08 [2] CRAN (R 4.6.0)
## MKdescr 0.9 2025-09-10 [2] CRAN (R 4.6.0)
## MKinfer 1.2 2024-04-06 [2] CRAN (R 4.6.0)
## MKmisc 1.9 2022-11-19 [2] CRAN (R 4.6.0)
## mlapi 0.1.1 2022-04-24 [2] CRAN (R 4.6.0)
## mlbench 2.1-6 2024-12-30 [2] CRAN (R 4.6.0)
## MLeval 0.3 2020-02-12 [2] CRAN (R 4.6.0)
## MLInterfaces 1.91.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MLP 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mlr 2.19.3 2025-08-22 [2] CRAN (R 4.6.0)
## mlr3 1.3.0 2025-12-03 [2] CRAN (R 4.6.0)
## mlr3learners 0.13.0 2025-10-02 [2] CRAN (R 4.6.0)
## mlr3measures 1.2.0 2025-11-25 [2] CRAN (R 4.6.0)
## mlr3misc 0.19.0 2025-09-12 [2] CRAN (R 4.6.0)
## mlr3tuning 1.5.0 2025-11-07 [2] CRAN (R 4.6.0)
## mlrMBO 1.1.5.1 2022-07-04 [2] CRAN (R 4.6.0)
## MLSeq 2.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mltools 0.3.5 2018-05-12 [2] CRAN (R 4.6.0)
## mmand 1.6.3 2023-02-07 [2] CRAN (R 4.6.0)
## MMDiff2 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MMDiffBamSubset 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MMUPHin 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mnem 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mnormt 2.1.1 2022-09-26 [2] CRAN (R 4.6.0)
## moanin 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mobileRNA 1.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mockery 0.4.5 2025-09-04 [2] CRAN (R 4.6.0)
## mockr 0.2.2 2025-05-01 [2] CRAN (R 4.6.0)
## MODA 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ModCon 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## modeest 2.4.0 2019-11-18 [2] CRAN (R 4.6.0)
## ModelMetrics 1.2.2.2 2020-03-17 [2] CRAN (R 4.6.0)
## modelr 0.1.11 2023-03-22 [2] CRAN (R 4.6.0)
## modeltools 0.2-24 2025-05-02 [2] CRAN (R 4.6.0)
## MOFA2 1.21.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MOFAdata 1.27.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MOGAMUN 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mogsa 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MoleculeExperiment 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MOMA 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## moments 0.14.1 2022-05-02 [2] CRAN (R 4.6.0)
## monaLisa 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## monocle 2.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MonoPoly 0.3-10 2019-04-24 [2] CRAN (R 4.6.0)
## Moonlight2R 1.9.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MoonlightR 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mosaicCore 0.9.5 2025-07-30 [2] CRAN (R 4.6.0)
## mosaics 2.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mosaicsExample 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## mosbi 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MOSClip 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mosdef 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MOSim 2.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Motif2Site 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## motifbreakR 2.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## motifcounter 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MotifDb 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## motifmatchr 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MotifPeeker 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## motifStack 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## motifTestR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mouse4302.db 3.13.0 2025-11-17 [2] Bioconductor
## mouse4302cdf 2.18.0 2025-11-17 [2] Bioconductor
## mouse4302frmavecs 1.5.0 2025-11-17 [2] Bioconductor
## MouseFM 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MouseGastrulationData 1.25.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## MouseThymusAgeing 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## MPAC 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mpath 0.4-2.26 2024-06-27 [2] CRAN (R 4.6.0)
## MPFE 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mpm 1.0-23 2022-04-01 [2] CRAN (R 4.6.0)
## mpra 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MPRAnalyze 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mrfDepth 1.0.17 2024-05-24 [2] CRAN (R 4.6.0)
## mRMRe 2.1.2.2 2024-11-05 [2] CRAN (R 4.6.0)
## msa 1.43.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSA2dist 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsBackendMassbank 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsBackendMetaboLights 1.5.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsBackendMgf 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsBackendMsp 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsBackendRawFileReader 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsBackendSql 1.11.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsCoreUtils 1.23.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msd16s 1.29.0 2025-10-24 [2] Bioconductor 3.23 (R 4.6.0)
## msdata 0.51.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MsDataHub 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msentropy 0.1.4 2023-08-07 [2] CRAN (R 4.6.0)
## MsExperiment 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsFeatures 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msgbsR 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msigdb 1.19.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## msigdbr 25.1.1 2025-07-21 [2] CRAN (R 4.6.0)
## msImpute 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mslp 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msm 1.8.2 2024-11-07 [2] CRAN (R 4.6.0)
## msmsEDA 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msmsTests 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSnbase 2.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSnID 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mspms 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSPrep 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msPurity 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## msPurityData 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## msqc1 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## msqrob2 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MsQuality 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstats 4.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsBig 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsBioNet 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsConvert 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsLiP 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsLOBD 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsPTM 2.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsQC 2.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsQCgui 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsResponse 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsShiny 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MSstatsTMT 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mstate 0.3.3 2024-07-11 [2] CRAN (R 4.6.0)
## mtbls2 1.41.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## MTLR 0.2.1 2019-06-03 [2] CRAN (R 4.6.0)
## MuData 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Mulcom 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multcomp 1.4-29 2025-10-20 [2] CRAN (R 4.6.0)
## multcompView 0.1-10 2024-03-08 [2] CRAN (R 4.6.0)
## MultiAssayExperiment 1.37.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MultiBaC 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multiClust 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multicool 1.0.1 2024-02-05 [2] CRAN (R 4.6.0)
## multicrispr 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MultiDataSet 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multiGSEA 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multiHiCcompare 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MultiMed 2.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multiMiR 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MultimodalExperiment 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multinet 4.3.2 2025-10-24 [2] CRAN (R 4.6.0)
## MultiRNAflow 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multiscan 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multistateQTL 2.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multitaper 1.0-17 2023-07-20 [2] CRAN (R 4.6.0)
## multiWGCNA 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## multtest 2.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MuMIn 1.48.11 2025-04-01 [2] CRAN (R 4.6.0)
## mumosa 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MungeSumstats 1.19.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Mus.musculus 1.3.1 2025-11-17 [2] Bioconductor
## muscat 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## muscData 1.25.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## muscle 3.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## musicatk 2.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## muSpaData 1.3.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## MutationalPatterns 3.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mutoss 0.1-13 2023-03-14 [2] CRAN (R 4.6.0)
## mutscan 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## MUVR2 0.1.0 2024-09-16 [2] CRAN (R 4.6.0)
## MVCClass 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mvnfast 0.2.8 2023-02-23 [2] CRAN (R 4.6.0)
## mvoutData 1.47.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## mvoutlier 2.1.1 2021-07-30 [2] CRAN (R 4.6.0)
## mvtnorm 1.3-3 2025-01-10 [2] CRAN (R 4.6.0)
## MWASTools 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mwcsr 0.1.10 2025-11-05 [2] CRAN (R 4.6.0)
## mycor 0.1.1 2018-04-10 [2] CRAN (R 4.6.0)
## mygene 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## myvariant 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mzID 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## mzR 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nabor 0.5.0 2018-07-11 [2] CRAN (R 4.6.0)
## NADfinder 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## naivebayes 1.0.0 2024-03-16 [2] CRAN (R 4.6.0)
## naniar 1.1.0 2024-03-05 [2] CRAN (R 4.6.0)
## nanoarrow 0.7.0-2 2025-12-04 [2] CRAN (R 4.6.0)
## NanoMethViz 3.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nanonext 1.7.2 2025-11-03 [2] CRAN (R 4.6.0)
## nanoparquet 0.4.2 2025-02-22 [2] CRAN (R 4.6.0)
## NanoporeRNASeq 1.21.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## NanoStringDiff 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NanoStringNCTools 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nanotime 0.3.12 2025-04-02 [2] CRAN (R 4.6.0)
## NanoTube 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nanotubes 1.27.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## naturalsort 0.1.3 2016-08-30 [2] CRAN (R 4.6.0)
## NBAMSeq 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NbClust 3.0.1 2022-05-02 [2] CRAN (R 4.6.0)
## NBPSeq 0.3.1 2022-06-09 [2] CRAN (R 4.6.0)
## ncdf4 1.24 2025-03-25 [2] CRAN (R 4.6.0)
## ncdfFlow 2.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ncGTW 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NCmisc 1.2.0 2022-10-17 [2] CRAN (R 4.6.0)
## ncRNAtools 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ndexr 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Nebulosa 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nempi 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NetActivity 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NetActivityData 1.13.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## netboost 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## netgsa 4.0.6 2025-07-30 [2] CRAN (R 4.6.0)
## nethet 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NetPathMiner 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## netprioR 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NetRep 1.2.9 2025-10-23 [2] CRAN (R 4.6.0)
## netresponse 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NetSAM 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## netSmooth 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## network 1.19.0 2024-12-09 [2] CRAN (R 4.6.0)
## networkD3 0.4.1 2025-04-14 [2] CRAN (R 4.6.0)
## NewWave 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NGLVieweR 1.4.0 2024-11-22 [2] CRAN (R 4.6.0)
## ngsReports 2.13.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NHPoisson 3.3 2020-02-19 [2] CRAN (R 4.6.0)
## nipals 1.0 2024-12-02 [2] CRAN (R 4.6.0)
## nipalsMCIA 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NISTunits 1.0.1 2016-08-11 [2] CRAN (R 4.6.0)
## nlcv 0.3.6 2025-05-06 [2] CRAN (R 4.6.0)
## nleqslv 3.3.5 2023-11-26 [2] CRAN (R 4.6.0)
## nlme 3.1-168 2025-03-31 [2] CRAN (R 4.6.0)
## nloptr 2.2.1 2025-03-17 [2] CRAN (R 4.6.0)
## NLP 0.3-2 2024-11-20 [2] CRAN (R 4.6.0)
## nls2 0.3-4 2024-07-14 [2] CRAN (R 4.6.0)
## NMF 0.28 2024-08-22 [2] CRAN (R 4.6.0)
## NMFN 2.0.1 2022-06-23 [2] CRAN (R 4.6.0)
## NMI 2.0 2016-08-20 [2] CRAN (R 4.6.0)
## NMRphasing 1.0.7 2025-06-24 [2] CRAN (R 4.6.0)
## nnet 7.3-20 2025-01-01 [2] CRAN (R 4.6.0)
## nnlasso 0.3 2016-03-10 [2] CRAN (R 4.6.0)
## nnls 1.6 2024-10-23 [2] CRAN (R 4.6.0)
## nnNorm 2.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nnSVG 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nnTensor 1.3.0 2024-05-13 [2] CRAN (R 4.6.0)
## NOISeq 2.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nondetects 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nor1mix 1.3-3 2024-04-06 [2] CRAN (R 4.6.0)
## NoRCE 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## norm 1.0-11.1 2023-06-18 [2] CRAN (R 4.6.0)
## normalize450K 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NormalyzerDE 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NormqPCR 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## normr 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nortest 1.0-4 2015-07-30 [2] CRAN (R 4.6.0)
## notame 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## notameStats 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## notameViz 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## np 0.60-18 2024-12-10 [2] CRAN (R 4.6.0)
## NPARC 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## npGSEA 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nsga2R 1.1 2022-05-23 [2] CRAN (R 4.6.0)
## NTW 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nucleoSim 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nucleR 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nuCpos 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nullranges 1.17.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## nullrangesData 1.17.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## numbers 0.9-2 2025-11-20 [2] CRAN (R 4.6.0)
## numDeriv 2016.8-1.1 2019-06-06 [2] CRAN (R 4.6.0)
## NuPoP 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## NxtIRFdata 1.17.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## objectProperties 0.6.8 2022-05-02 [2] CRAN (R 4.6.0)
## objectSignals 0.10.3 2022-04-05 [2] CRAN (R 4.6.0)
## occugene 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OCplus 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## octad 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## octad.db 1.13.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## odseq 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## officer 0.7.2 2025-12-04 [2] CRAN (R 4.6.0)
## OGRE 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OHCA 1.7.0 2025-12-17 [1] Bioconductor 3.23 (R 4.6.0)
## oligo 1.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## oligoClasses 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## oligoData 1.8.0 2025-11-17 [2] Bioconductor
## OLIN 1.89.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OLINgui 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OlinkAnalyze 4.4.0 2025-12-02 [2] CRAN (R 4.6.0)
## omada 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OmaDB 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## omicade4 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OmicCircos 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## omicplotR 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## omicRexposome 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## omicsGMF 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OmicsMLRepoR 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OMICsPCA 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OMICsPCAdata 1.29.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## omicsPrint 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## omicsViewer 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Omixer 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OmnipathR 3.19.5 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ompBAM 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## omXplore 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## oncomix 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## oncoscanR 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OncoScore 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OncoSimulR 4.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Oncotree 0.3.5 2023-09-27 [2] CRAN (R 4.6.0)
## onlineFDR 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ontologyIndex 2.12 2024-02-27 [2] CRAN (R 4.6.0)
## ontologyPlot 1.7 2024-02-20 [2] CRAN (R 4.6.0)
## ontoProc 2.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## openair 2.19.0 2025-08-28 [2] CRAN (R 4.6.0)
## opencpu 2.2.14 2024-10-04 [2] CRAN (R 4.6.0)
## openCyto 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## openEBGM 0.9.1 2023-09-14 [2] CRAN (R 4.6.0)
## openPrimeR 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## openssl 2.3.4 2025-09-30 [2] CRAN (R 4.6.0)
## OpenStats 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## openxlsx 4.2.8.1 2025-10-31 [2] CRAN (R 4.6.0)
## operator.tools 1.6.3 2017-02-28 [2] CRAN (R 4.6.0)
## oposSOM 2.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## oppar 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## optimalFlow 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## optimalFlowData 1.23.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## optimParallel 1.0-2 2021-02-11 [2] CRAN (R 4.6.0)
## optimx 2025-4.9 2025-04-10 [2] CRAN (R 4.6.0)
## optparse 1.7.5 2024-04-16 [2] CRAN (R 4.6.0)
## OPWeight 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OrderedList 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ordinal 2023.12-4.1 2024-08-19 [2] CRAN (R 4.6.0)
## ore 1.7.5.1 2025-03-14 [2] CRAN (R 4.6.0)
## ORFhunteR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ORFik 1.31.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## org.Ag.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.At.tair.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Bt.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Ce.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Cf.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Dm.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Dr.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.EcK12.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.EcSakai.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Gg.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Hs.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Mm.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Mmu.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Pt.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Rn.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Sc.sgd.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Ss.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## org.Xl.eg.db 3.22.0 2025-11-17 [2] Bioconductor
## Organism.dplyr 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OrganismDbi 1.53.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OrgMassSpecR 0.5-3 2017-08-13 [2] CRAN (R 4.6.0)
## origami 1.0.7 2022-10-19 [2] CRAN (R 4.6.0)
## orthogene 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## orthos 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## orthosData 1.9.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## OSAT 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OSCA 1.21.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## OSCA.advanced 1.19.1 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## OSCA.basic 1.19.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## OSCA.intro 1.19.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## OSCA.multisample 1.19.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## OSCA.workflows 1.19.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## Oscope 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## osfr 0.2.9 2022-09-25 [2] CRAN (R 4.6.0)
## osqp 0.6.3.3 2024-06-08 [2] CRAN (R 4.6.0)
## OSTA 1.1.7 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## OSTA.data 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## otel 0.2.0 2025-08-29 [2] CRAN (R 4.6.0)
## OTUbase 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## outliers 0.15 2022-03-26 [2] CRAN (R 4.6.0)
## OUTRIDER 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OutSplice 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## OVESEG 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PAA 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## packFinder 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## padma 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PADOG 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pageRank 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## paintmap 1.0 2016-08-31 [2] CRAN (R 4.6.0)
## PAIRADISE 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## paircompviz 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PairedData 1.1.1 2018-06-02 [2] CRAN (R 4.6.0)
## pairedGSEA 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pairkat 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pairsD3 0.1.3 2022-06-06 [2] CRAN (R 4.6.0)
## pak 0.9.1 2025-12-01 [2] CRAN (R 4.6.0)
## paletteer 1.6.0 2024-01-21 [2] CRAN (R 4.6.0)
## palmerpenguins 0.1.1 2022-08-15 [2] CRAN (R 4.6.0)
## pals 1.10 2025-03-07 [2] CRAN (R 4.6.0)
## pamr 1.57 2024-07-01 [2] CRAN (R 4.6.0)
## pan 1.9 2023-12-07 [2] CRAN (R 4.6.0)
## pandaR 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pander 0.6.6 2025-03-01 [2] CRAN (R 4.6.0)
## panelcn.mops 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PanomiR 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## panp 1.81.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PANR 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PANTHER.db 1.0.12 2023-10-11 [2] Bioconductor
## paradox 1.0.1 2024-07-09 [2] CRAN (R 4.6.0)
## parallel 4.6.0 2025-10-21 [?] local
## parallelDist 0.2.7 2025-09-27 [2] CRAN (R 4.6.0)
## ParallelLogger 3.5.1 2025-10-29 [2] CRAN (R 4.6.0)
## parallelly 1.45.1 2025-07-24 [2] CRAN (R 4.6.0)
## parallelMap 1.5.1 2021-06-28 [2] CRAN (R 4.6.0)
## parameters 0.28.3 2025-11-25 [2] CRAN (R 4.6.0)
## ParamHelpers 1.14.2 2025-01-09 [2] CRAN (R 4.6.0)
## parglms 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## parmigene 1.1.1 2024-10-21 [2] CRAN (R 4.6.0)
## parody 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## parsedate 1.3.2 2024-12-09 [2] CRAN (R 4.6.0)
## partCNV 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## party 1.3-18 2025-01-29 [2] CRAN (R 4.6.0)
## partykit 1.2-24 2025-05-02 [2] CRAN (R 4.6.0)
## pasilla 1.39.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## pasillaBamSubset 0.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## PasillaTranscriptExpr 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## PAST 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pastecs 1.4.2 2024-02-01 [2] CRAN (R 4.6.0)
## patchwork 1.3.2 2025-08-25 [2] CRAN (R 4.6.0)
## Path2PPI 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pathifier 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pathlinkR 1.7.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pathMED 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PathNet 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PathNetData 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## PathoStat 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pathRender 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pathview 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pathwayPCA 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## patrick 0.3.1 2025-12-02 [2] CRAN (R 4.6.0)
## paws.common 0.8.7 2025-11-25 [2] CRAN (R 4.6.0)
## paws.storage 0.9.0 2025-03-14 [2] CRAN (R 4.6.0)
## pbapply 1.7-4 2025-07-20 [2] CRAN (R 4.6.0)
## pbdZMQ 0.3-14 2025-04-13 [2] CRAN (R 4.6.0)
## pbivnorm 0.6.0 2015-01-23 [2] CRAN (R 4.6.0)
## pbkrtest 0.5.5 2025-07-18 [2] CRAN (R 4.6.0)
## pbmcapply 1.5.1 2022-04-28 [2] CRAN (R 4.6.0)
## pbs 1.1 2013-06-08 [2] CRAN (R 4.6.0)
## pbv 0.5-47 2023-11-30 [2] CRAN (R 4.6.0)
## pcaExplorer 3.5.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pcalg 2.7-12 2024-09-12 [2] CRAN (R 4.6.0)
## pcaMethods 2.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PCAN 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pcaPP 2.0-5 2024-08-19 [2] CRAN (R 4.6.0)
## PCAtools 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PCHiCdata 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## pd.genomewidesnp.5 3.14.1 2025-11-17 [2] Bioconductor
## pd.genomewidesnp.6 3.14.1 2025-11-17 [2] Bioconductor
## pd.hg.u95a 3.12.0 2025-11-17 [2] Bioconductor
## pd.hg.u95av2 3.12.0 2025-11-17 [2] Bioconductor
## pd.hg18.60mer.expr 3.12.0 2025-11-17 [2] Bioconductor
## pd.huex.1.0.st.v2 3.14.1 2025-11-17 [2] Bioconductor
## pd.hugene.1.0.st.v1 3.14.1 2025-11-17 [2] Bioconductor
## pd.mapping250k.nsp 3.12.0 2025-11-17 [2] Bioconductor
## pd.mapping250k.sty 3.12.0 2025-11-17 [2] Bioconductor
## pd.mapping50k.hind240 3.12.0 2025-11-17 [2] Bioconductor
## pd.mapping50k.xba240 3.12.0 2025-11-17 [2] Bioconductor
## PDATK 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pdfCluster 1.0-4 2022-12-02 [2] CRAN (R 4.6.0)
## pdftools 3.6.0 2025-09-10 [2] CRAN (R 4.6.0)
## pdInfoBuilder 1.75.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pdist 1.2.1 2022-05-02 [2] CRAN (R 4.6.0)
## PeacoQC 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## peakCombiner 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## peakPantheR 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pec 2025.06.24 2025-07-24 [2] CRAN (R 4.6.0)
## PECA 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## peco 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Pedixplorer 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## penalized 0.9-53 2025-10-02 [2] CRAN (R 4.6.0)
## pengls 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pepDat 1.31.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## PepSetTest 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PepsNMR 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PepsNMRData 1.29.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## pepStat 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Peptides 2.4.6 2023-12-13 [2] CRAN (R 4.6.0)
## pepXMLTab 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PerfMeas 1.2.5 2022-09-14 [2] CRAN (R 4.6.0)
## performance 0.15.3 2025-12-01 [2] CRAN (R 4.6.0)
## PerformanceAnalytics 2.0.8 2024-12-09 [2] CRAN (R 4.6.0)
## periodicDNA 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PERMANOVA 0.2.0 2021-09-06 [2] CRAN (R 4.6.0)
## permute 0.9-8 2025-06-25 [2] CRAN (R 4.6.0)
## perturbR 0.1.3 2019-02-19 [2] CRAN (R 4.6.0)
## PFAM.db 3.22.0 2025-11-17 [2] Bioconductor
## pfamAnalyzeR 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pgca 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pgxRpi 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phangorn 2.12.1 2024-09-17 [2] CRAN (R 4.6.0)
## phantasus 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phantasusLite 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PharmacoGx 3.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phastCons100way.UCSC.hg19 3.7.2 2025-11-17 [2] Bioconductor
## phastCons100way.UCSC.hg38 3.7.1 2025-11-17 [2] Bioconductor
## pheatmap 1.0.13 2025-06-05 [2] CRAN (R 4.6.0)
## PhenoGeneRanker 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phenomis 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phenopath 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phenoTest 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## philentropy 0.10.0 2025-11-03 [2] CRAN (R 4.6.0)
## philr 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PhIPData 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phosphonormalizer 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phosphoricons 0.2.1 2024-04-08 [2] CRAN (R 4.6.0)
## PhosR 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phyclust 0.1-34 2023-09-06 [2] CRAN (R 4.6.0)
## phylobase 0.8.12 2024-01-30 [2] CRAN (R 4.6.0)
## phylogram 2.1.0 2018-06-25 [2] CRAN (R 4.6.0)
## phylolm 2.6.5 2024-09-30 [2] CRAN (R 4.6.0)
## PhyloProfile 2.3.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phyloseq 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## phytools 2.5-2 2025-09-19 [2] CRAN (R 4.6.0)
## piano 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PICB 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pickgene 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Pigengene 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## piggyback 0.1.5 2023-07-10 [2] CRAN (R 4.6.0)
## pillar 1.11.1 2025-09-17 [2] CRAN (R 4.6.0)
## pinfsc50 1.3.0 2023-12-05 [2] CRAN (R 4.6.0)
## pingr 2.0.5 2024-12-12 [2] CRAN (R 4.6.0)
## pipeComp 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pipeFrame 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PIPETS 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Pirat 1.5.7 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## piton 1.0.1 2025-11-30 [2] CRAN (R 4.6.0)
## PIUMA 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pixmap 0.4-14 2025-07-26 [2] CRAN (R 4.6.0)
## PK 1.3-6 2023-09-12 [2] CRAN (R 4.6.0)
## pkgbuild 1.4.8 2025-05-26 [2] CRAN (R 4.6.0)
## pkgcond 0.1.1 2021-04-28 [2] CRAN (R 4.6.0)
## pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.6.0)
## pkgdown 2.2.0 2025-11-06 [2] CRAN (R 4.6.0)
## pkgload 1.4.1 2025-09-23 [2] CRAN (R 4.6.0)
## pkgndep 1.99.3 2023-10-13 [2] CRAN (R 4.6.0)
## planet 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## planttfhunter 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plasmodiumanophelescdf 2.18.0 2025-11-17 [2] Bioconductor
## plasmut 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plgem 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plier 1.81.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plogr 0.2.0 2018-03-25 [2] CRAN (R 4.6.0)
## plot3D 1.4.2 2025-07-25 [2] CRAN (R 4.6.0)
## plot3Drgl 1.0.5 2025-07-25 [2] CRAN (R 4.6.0)
## plotfunctions 1.4 2020-04-28 [2] CRAN (R 4.6.0)
## plotgardener 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plotgardenerData 1.17.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## plotGrouper 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plotly 4.11.0 2025-06-19 [2] CRAN (R 4.6.0)
## plotmo 3.6.4 2024-08-31 [2] CRAN (R 4.6.0)
## plotrix 3.8-13 2025-11-15 [2] CRAN (R 4.6.0)
## plotROC 2.3.3 2025-08-25 [2] CRAN (R 4.6.0)
## PlotTools 0.3.1 2024-09-03 [2] CRAN (R 4.6.0)
## PLPE 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pls 2.8-5 2024-09-15 [2] CRAN (R 4.6.0)
## PLSDAbatch 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plsgenomics 1.5-3 2024-03-28 [2] CRAN (R 4.6.0)
## plsVarSel 0.9.13 2025-04-09 [2] CRAN (R 4.6.0)
## plyinteractions 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plyr 1.8.9 2023-10-02 [2] CRAN (R 4.6.0)
## plyranges 1.31.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## plyxp 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PMA 1.2-4 2024-09-03 [2] CRAN (R 4.6.0)
## PMCMRplus 1.9.12 2024-09-08 [2] CRAN (R 4.6.0)
## pmm 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pmp 1.23.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PMScanR 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## png 0.1-8 2022-11-29 [2] CRAN (R 4.6.0)
## PoDCall 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## podkat 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## poem 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pogos 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## poibin 1.6 2024-08-23 [2] CRAN (R 4.6.0)
## PoiClaClu 1.0.2.1 2019-01-04 [2] CRAN (R 4.6.0)
## PoissonBinomial 1.2.7 2024-09-17 [2] CRAN (R 4.6.0)
## polspline 1.1.25 2024-05-10 [2] CRAN (R 4.6.0)
## Polychrome 1.5.4 2025-04-06 [2] CRAN (R 4.6.0)
## polyclip 1.10-7 2024-07-23 [2] CRAN (R 4.6.0)
## polycor 0.8-1 2022-01-11 [2] CRAN (R 4.6.0)
## polyCub 0.9.2 2025-02-11 [2] CRAN (R 4.6.0)
## polylabelr 0.3.0 2024-11-19 [2] CRAN (R 4.6.0)
## polynom 1.4-1 2022-04-11 [2] CRAN (R 4.6.0)
## PolynomF 2.0-8 2024-03-03 [2] CRAN (R 4.6.0)
## PolyPhen.Hsapiens.dbSNP131 1.0.2 2025-11-17 [2] Bioconductor
## PolySTest 1.5.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Polytect 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## POMA 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pool 1.0.4 2024-10-07 [2] CRAN (R 4.6.0)
## poolr 1.2-0 2025-05-07 [2] CRAN (R 4.6.0)
## poorman 0.2.7 2023-10-30 [2] CRAN (R 4.6.0)
## posterior 1.6.1 2025-02-27 [2] CRAN (R 4.6.0)
## poweRlaw 1.0.0 2025-02-03 [2] CRAN (R 4.6.0)
## powerTCR 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## POWSC 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ppclust 1.1.0.1 2023-12-13 [2] CRAN (R 4.6.0)
## ppcor 1.1 2015-12-03 [2] CRAN (R 4.6.0)
## ppcseq 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PPInfer 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pqsfinder 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## prabclus 2.3-4 2024-09-24 [2] CRAN (R 4.6.0)
## pracma 2.4.6 2025-10-22 [2] CRAN (R 4.6.0)
## praise 1.0.0 2015-08-11 [2] CRAN (R 4.6.0)
## pram 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## praznik 12.0.0 2025-11-11 [2] CRAN (R 4.6.0)
## prebs 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## prebsdata 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## preciseTAD 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## precrec 0.14.5 2025-05-15 [2] CRAN (R 4.6.0)
## PREDA 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PREDAsampledata 0.51.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## prediction 0.3.18 2024-06-11 [2] CRAN (R 4.6.0)
## preprocessCore 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## preseqR 4.0.0 2018-06-27 [2] CRAN (R 4.6.0)
## prettydoc 0.4.1 2021-01-10 [2] CRAN (R 4.6.0)
## prettyGraphs 2.2.0 2025-04-12 [2] CRAN (R 4.6.0)
## prettyunits 1.2.0 2023-09-24 [2] CRAN (R 4.6.0)
## primirTSS 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PRIMME 3.2-6 2024-01-09 [2] CRAN (R 4.6.0)
## PrInCE 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## princurve 2.1.6 2021-01-18 [2] CRAN (R 4.6.0)
## printr 0.3 2023-03-08 [2] CRAN (R 4.6.0)
## prismatic 1.1.2 2024-04-10 [2] CRAN (R 4.6.0)
## proActiv 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## proBAMr 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pROC 1.19.0.1 2025-07-31 [2] CRAN (R 4.6.0)
## PROcess 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## processx 3.8.6 2025-02-21 [2] CRAN (R 4.6.0)
## procoil 2.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## proDA 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## prodlim 2025.04.28 2025-04-28 [2] CRAN (R 4.6.0)
## profileModel 0.6.1 2021-01-08 [2] CRAN (R 4.6.0)
## profileScoreDist 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## profmem 0.7.0 2025-05-02 [2] CRAN (R 4.6.0)
## profvis 0.4.0 2024-09-20 [2] CRAN (R 4.6.0)
## progeny 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## progress 1.2.3 2023-12-06 [2] CRAN (R 4.6.0)
## progressr 0.18.0 2025-11-06 [2] CRAN (R 4.6.0)
## proj4 1.0-15 2025-03-21 [2] CRAN (R 4.6.0)
## projectR 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pRoloc 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pRolocdata 1.49.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## pRolocGUI 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PROMISE 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## promises 1.5.0 2025-11-01 [2] CRAN (R 4.6.0)
## PRONE 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## propagate 1.0-7 2025-05-27 [2] CRAN (R 4.6.0)
## PROPER 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PROPS 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Prostar 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## proteinProfiles 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ProteoDisco 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ProteoMM 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## protGear 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ProtGenerics 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## proto 1.0.0 2016-10-29 [2] CRAN (R 4.6.0)
## protolite 2.3.1 2024-10-04 [2] CRAN (R 4.6.0)
## protr 1.7-5 2025-08-21 [2] CRAN (R 4.6.0)
## protViz 0.7.9 2023-12-12 [2] CRAN (R 4.6.0)
## proxy 0.4-27 2022-06-09 [2] CRAN (R 4.6.0)
## proxyC 0.5.2 2025-04-25 [2] CRAN (R 4.6.0)
## PRROC 1.4 2025-03-18 [2] CRAN (R 4.6.0)
## pryr 0.1.6 2023-01-17 [2] CRAN (R 4.6.0)
## ps 1.9.1 2025-04-12 [2] CRAN (R 4.6.0)
## PSCBS 0.68.0 2025-04-18 [2] CRAN (R 4.6.0)
## pscl 1.5.9 2024-01-31 [2] CRAN (R 4.6.0)
## psichomics 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PSMatch 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pspline 1.0-21 2024-12-11 [2] CRAN (R 4.6.0)
## psych 2.5.6 2025-06-23 [2] CRAN (R 4.6.0)
## ptairData 1.19.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## ptairMS 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PtH2O2lipids 1.37.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## ptw 1.9-16 2022-01-19 [2] CRAN (R 4.6.0)
## Publish 2025.07.24 2025-07-24 [2] CRAN (R 4.6.0)
## pulsar 0.3.11 2023-09-24 [2] CRAN (R 4.6.0)
## puma 3.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pumadata 2.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## PureCN 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## purrr 1.2.0 2025-11-04 [2] CRAN (R 4.6.0)
## pushbar 0.1.0 2019-03-15 [2] CRAN (R 4.6.0)
## pvac 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pvca 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pvclust 2.2-0 2019-11-19 [2] CRAN (R 4.6.0)
## Pviz 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## pwalign 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PWMEnrich 4.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## PWMEnrich.Dmelanogaster.background 4.45.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## PWMEnrich.Hsapiens.background 4.45.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## PWMEnrich.Mmusculus.background 4.45.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## pwr 1.3-0 2020-03-17 [2] CRAN (R 4.6.0)
## qap 0.1-2 2022-06-27 [2] CRAN (R 4.6.0)
## qcmetrics 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qdapRegex 0.7.10 2025-03-24 [2] CRAN (R 4.6.0)
## qdapTools 1.3.7 2023-05-10 [2] CRAN (R 4.6.0)
## QDNAseq 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## QDNAseq.hg19 1.41.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## QDNAseq.mm10 1.41.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## QFeatures 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qgraph 1.9.8 2023-11-03 [2] CRAN (R 4.6.0)
## qmtools 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qpcR 1.4-2 2025-06-10 [2] CRAN (R 4.6.0)
## qpcrNorm 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qpdf 1.4.1 2025-07-02 [2] CRAN (R 4.6.0)
## qpgraph 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qPLEXanalyzer 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qqconf 1.3.2 2023-04-14 [2] CRAN (R 4.6.0)
## qqman 0.1.9 2023-08-23 [2] CRAN (R 4.6.0)
## QRscore 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qs 0.27.3 2025-03-11 [2] CRAN (R 4.6.0)
## qs2 0.1.6 2025-11-21 [2] CRAN (R 4.6.0)
## qsmooth 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## QSutils 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qsvaR 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qtl 1.74 2025-12-08 [2] CRAN (R 4.6.0)
## QTLExperiment 2.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Qtlizer 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## quadprog 1.5-8 2019-11-20 [2] CRAN (R 4.6.0)
## qualV 0.3-5 2023-07-02 [2] CRAN (R 4.6.0)
## quanteda 4.3.1 2025-07-10 [2] CRAN (R 4.6.0)
## quantiseqr 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## quantmod 0.4.28 2025-06-19 [2] CRAN (R 4.6.0)
## quantreg 6.1 2025-03-10 [2] CRAN (R 4.6.0)
## quantro 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## quantsmooth 1.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## quarto 1.5.1 2025-09-04 [2] CRAN (R 4.6.0)
## QuasR 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## QuaternaryProd 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## QUBIC 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## QUBICdata 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## questionr 0.8.1 2025-06-10 [2] CRAN (R 4.6.0)
## QuickJSR 1.8.1 2025-09-20 [2] CRAN (R 4.6.0)
## quitefastmst 0.9.0 2025-07-23 [2] CRAN (R 4.6.0)
## qusage 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qvalue 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## qvcalc 1.0.4 2025-01-24 [2] CRAN (R 4.6.0)
## R.cache 0.17.0 2025-05-02 [2] CRAN (R 4.6.0)
## R.devices 2.17.2 2024-01-29 [2] CRAN (R 4.6.0)
## R.filesets 2.15.1 2024-01-24 [2] CRAN (R 4.6.0)
## R.huge 0.10.1 2024-01-24 [2] CRAN (R 4.6.0)
## R.matlab 3.7.0 2022-08-25 [2] CRAN (R 4.6.0)
## R.methodsS3 1.8.2 2022-06-13 [2] CRAN (R 4.6.0)
## R.oo 1.27.1 2025-05-02 [2] CRAN (R 4.6.0)
## R.rsp 0.46.0 2024-02-17 [2] CRAN (R 4.6.0)
## R.utils 2.13.0 2025-02-24 [2] CRAN (R 4.6.0)
## r2glmm 0.1.3 2025-04-28 [2] CRAN (R 4.6.0)
## R2HTML 2.3.4 2024-06-16 [2] CRAN (R 4.6.0)
## R2jags 0.8-9 2024-10-13 [2] CRAN (R 4.6.0)
## r2r 0.1.2 2024-11-09 [2] CRAN (R 4.6.0)
## R2WinBUGS 2.1-23 2025-07-23 [2] CRAN (R 4.6.0)
## r3Cseq 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## r3dmol 0.1.2 2021-03-14 [2] CRAN (R 4.6.0)
## R453Plus1Toolbox 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## R4RNA 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## R6 2.6.1 2025-02-15 [2] CRAN (R 4.6.0)
## R6P 0.4.0 2024-12-22 [2] CRAN (R 4.6.0)
## radiant.data 1.6.8 2025-09-16 [2] CRAN (R 4.6.0)
## RadioGx 2.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rae230a.db 3.13.0 2025-11-17 [2] Bioconductor
## rae230aprobe 2.18.0 2025-11-17 [2] Bioconductor
## raer 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## raerdata 1.9.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## rafalib 1.0.4 2025-04-08 [2] CRAN (R 4.6.0)
## ragg 1.5.0 2025-09-02 [2] CRAN (R 4.6.0)
## RaggedExperiment 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RAIDS 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rain 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rainbow 3.8 2024-01-23 [2] CRAN (R 4.6.0)
## ramr 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RaMS 1.4.3 2024-10-09 [2] CRAN (R 4.6.0)
## ramwas 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## randomcoloR 1.1.0.1 2019-11-24 [2] CRAN (R 4.6.0)
## randomForest 4.7-1.2 2024-09-22 [2] CRAN (R 4.6.0)
## randomForestSRC 3.4.5 2025-11-26 [2] CRAN (R 4.6.0)
## randomizr 1.0.0 2023-08-10 [2] CRAN (R 4.6.0)
## randPack 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## randRotation 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## randtests 1.0.2 2024-04-23 [2] CRAN (R 4.6.0)
## randtoolbox 2.0.5 2024-10-18 [2] CRAN (R 4.6.0)
## ranger 0.17.0 2024-11-08 [2] CRAN (R 4.6.0)
## RankAggreg 0.6.6 2020-05-09 [2] CRAN (R 4.6.0)
## RankProd 3.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RANN 2.6.2 2024-08-25 [2] CRAN (R 4.6.0)
## rapiclient 0.1.8 2024-09-30 [2] CRAN (R 4.6.0)
## rapidjsonr 1.2.1 2025-11-24 [2] CRAN (R 4.6.0)
## RApiSerialize 0.1.4 2024-09-28 [2] CRAN (R 4.6.0)
## rappdirs 0.3.3 2021-01-31 [2] CRAN (R 4.6.0)
## rapportools 1.2 2025-02-28 [2] CRAN (R 4.6.0)
## RAREsim 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RareVariantVis 2.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rARPACK 0.11-0 2016-03-10 [2] CRAN (R 4.6.0)
## Rarr 1.11.15 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## raster 3.6-32 2025-03-28 [2] CRAN (R 4.6.0)
## Rattus.norvegicus 1.3.1 2025-11-17 [2] Bioconductor
## rawDiag 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rawrr 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RbcBook1 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rbec 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rbenchmark 1.0.0 2012-08-30 [2] CRAN (R 4.6.0)
## rBeta2009 1.0.1 2024-11-04 [2] CRAN (R 4.6.0)
## RBGL 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rbibutils 2.4 2025-11-07 [2] CRAN (R 4.6.0)
## rbioapi 0.8.3 2025-07-03 [2] CRAN (R 4.6.0)
## RBioFormats 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rbiom 2.2.1 2025-06-27 [2] CRAN (R 4.6.0)
## rBiopaxParser 2.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rBLAST 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RBM 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rbowtie 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rbowtie2 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rbsurv 2.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rbwa 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rcapture 1.4-4 2022-05-04 [2] CRAN (R 4.6.0)
## RCAS 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RCASPAR 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rcdd 1.6 2023-12-15 [2] CRAN (R 4.6.0)
## rcdk 3.8.2 2025-11-30 [2] CRAN (R 4.6.0)
## rcdklibs 2.9 2024-03-03 [2] CRAN (R 4.6.0)
## rcellminer 2.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rcellminerData 2.33.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## rCGH 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RCircos 1.2.2 2021-12-19 [2] CRAN (R 4.6.0)
## RcisTarget 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RcisTarget.hg19.motifDBs.cisbpOnly.500bp 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## rclipboard 0.2.1 2023-11-15 [2] CRAN (R 4.6.0)
## RCM 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rcmdcheck 1.4.0 2021-09-27 [2] CRAN (R 4.6.0)
## RColorBrewer 1.1-3 2022-04-03 [2] CRAN (R 4.6.0)
## rcompanion 2.5.1 2025-11-19 [2] CRAN (R 4.6.0)
## Rcpi 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rcpp 1.1.0.8.1 2025-12-08 [2] CRAN (R 4.6.0)
## RcppAlgos 2.9.3 2025-02-03 [2] CRAN (R 4.6.0)
## RcppAnnoy 0.0.22 2024-01-23 [2] CRAN (R 4.6.0)
## RcppArmadillo 15.2.2-1 2025-11-22 [2] CRAN (R 4.6.0)
## RcppCCTZ 0.2.13 2024-12-12 [2] CRAN (R 4.6.0)
## RcppDate 0.0.6 2025-05-29 [2] CRAN (R 4.6.0)
## RcppDE 0.1.8 2025-02-19 [2] CRAN (R 4.6.0)
## RcppDist 0.1.1.1 2025-06-12 [2] CRAN (R 4.6.0)
## RcppEigen 0.3.4.0.2 2024-08-24 [2] CRAN (R 4.6.0)
## RcppGSL 0.3.13 2023-01-13 [2] CRAN (R 4.6.0)
## RcppHMM 1.2.2.1 2025-09-17 [2] CRAN (R 4.6.0)
## RcppHNSW 0.6.0 2024-02-04 [2] CRAN (R 4.6.0)
## RcppHungarian 0.3 2023-09-05 [2] CRAN (R 4.6.0)
## RcppInt64 0.0.5 2024-04-30 [2] CRAN (R 4.6.0)
## RcppML 0.3.7 2021-09-21 [2] CRAN (R 4.6.0)
## RcppNumerical 0.6-0 2023-09-06 [2] CRAN (R 4.6.0)
## RcppParallel 5.1.11-1 2025-08-27 [2] CRAN (R 4.6.0)
## RcppProgress 0.4.2 2020-02-06 [2] CRAN (R 4.6.0)
## RcppRoll 0.3.1 2024-07-07 [2] CRAN (R 4.6.0)
## RcppSpdlog 0.0.23 2025-10-12 [2] CRAN (R 4.6.0)
## RcppThread 2.2.0 2025-01-07 [2] CRAN (R 4.6.0)
## RcppTOML 0.2.3 2025-03-08 [2] CRAN (R 4.6.0)
## RCSL 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RCurl 1.98-1.17 2025-03-22 [2] CRAN (R 4.6.0)
## Rcwl 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RcwlPipelines 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RCX 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RCy3 2.31.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RCyjs 2.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rdisop 1.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rdist 0.0.5 2020-05-04 [2] CRAN (R 4.6.0)
## Rdpack 2.6.4 2025-04-09 [2] CRAN (R 4.6.0)
## RDRToolbox 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## reactable 0.4.5 2025-12-01 [2] CRAN (R 4.6.0)
## reactome.db 1.94.0 2025-11-17 [2] Bioconductor
## ReactomeGSA 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ReactomeGSA.data 1.25.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## ReactomePA 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## reactR 0.6.1 2024-09-14 [2] CRAN (R 4.6.0)
## readbitmap 0.1.5 2018-06-27 [2] CRAN (R 4.6.0)
## reader 1.0.6 2017-01-03 [2] CRAN (R 4.6.0)
## readJDX 0.6.4 2023-11-18 [2] CRAN (R 4.6.0)
## readODS 2.3.2 2025-01-13 [2] CRAN (R 4.6.0)
## ReadqPCR 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## readr 2.1.6 2025-11-14 [2] CRAN (R 4.6.0)
## readxl 1.4.5 2025-03-07 [2] CRAN (R 4.6.0)
## rearrr 0.3.5 2025-03-03 [2] CRAN (R 4.6.0)
## REBET 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rebook 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rebus 0.1-3 2017-04-25 [2] CRAN (R 4.6.0)
## rebus.base 0.0-3 2017-04-25 [2] CRAN (R 4.6.0)
## rebus.datetimes 0.0-2 2022-11-03 [2] CRAN (R 4.6.0)
## rebus.numbers 0.0-1.1 2025-07-10 [2] CRAN (R 4.6.0)
## rebus.unicode 0.0-2.1 2025-09-23 [2] CRAN (R 4.6.0)
## receptLoss 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## recipes 1.3.1 2025-05-21 [2] CRAN (R 4.6.0)
## recommenderlab 1.0.7 2025-05-31 [2] CRAN (R 4.6.0)
## reconsi 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RecordLinkage 0.4-12.5 2025-07-28 [2] CRAN (R 4.6.0)
## recosystem 0.5.1 2023-05-05 [2] CRAN (R 4.6.0)
## recount 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## recount3 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## recountmethylation 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## recountWorkflow 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## recoup 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RedeR 3.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RedisParam 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## REDseq 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ReducedExperiment 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## redux 1.1.5 2025-09-01 [2] CRAN (R 4.6.0)
## RefManageR 1.4.0 2022-09-30 [2] CRAN (R 4.6.0)
## reformulas 0.4.2 2025-10-28 [2] CRAN (R 4.6.0)
## refund 0.1-38 2025-11-17 [2] CRAN (R 4.6.0)
## RegEnrich 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## regionalpcs 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RegionalST 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## regioneR 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## regioneReloaded 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## regionReport 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## registry 0.5-1 2019-03-05 [2] CRAN (R 4.6.0)
## regsplice 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## regutools 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## relations 0.6-15 2025-02-19 [2] CRAN (R 4.6.0)
## reldist 1.7-2 2023-02-17 [2] CRAN (R 4.6.0)
## relimp 1.0-5 2016-03-30 [2] CRAN (R 4.6.0)
## remaCor 0.0.20 2025-08-20 [2] CRAN (R 4.6.0)
## rematch 2.0.0 2023-08-30 [2] CRAN (R 4.6.0)
## rematch2 2.1.2 2020-05-01 [2] CRAN (R 4.6.0)
## remotes 2.5.0 2024-03-17 [2] CRAN (R 4.6.0)
## REMP 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rentrez 1.2.4 2025-06-11 [2] CRAN (R 4.6.0)
## renv 1.1.5 2025-07-24 [2] CRAN (R 4.6.0)
## repmis 0.5.1 2025-07-02 [2] CRAN (R 4.6.0)
## repo 2.1.5 2020-02-08 [2] CRAN (R 4.6.0)
## ReportingTools 2.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## reportr 1.3.1 2025-03-29 [2] CRAN (R 4.6.0)
## reportROC 3.6 2022-06-17 [2] CRAN (R 4.6.0)
## repr 1.1.7 2024-03-22 [2] CRAN (R 4.6.0)
## reprex 2.1.1 2024-07-06 [2] CRAN (R 4.6.0)
## RepViz 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## reshape 0.8.10 2025-06-19 [2] CRAN (R 4.6.0)
## reshape2 1.4.5 2025-11-12 [2] CRAN (R 4.6.0)
## ResidualMatrix 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RESOLVE 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## restfulr 0.0.16 2025-06-27 [2] CRAN (R 4.6.0)
## reticulate 1.44.1 2025-11-14 [2] CRAN (R 4.6.0)
## retrofit 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ReUseData 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rex 1.2.1 2021-11-26 [2] CRAN (R 4.6.0)
## rexposome 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rfaRm 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rfast 2.1.5.2 2025-10-10 [2] CRAN (R 4.6.0)
## RFLOMICS 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RforProteomics 1.49.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## rfPred 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rGenomeTracks 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rGenomeTracksData 0.99.0 2025-11-17 [2] Bioconductor
## rgenoud 5.9-0.11 2024-09-04 [2] CRAN (R 4.6.0)
## rgl 1.3.31 2025-11-14 [2] CRAN (R 4.6.0)
## RgnTX 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rgoslin 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RGraph2js 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rgraphviz 2.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rGREAT 2.13.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RGSEA 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rgsepd 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rhandsontable 0.3.8 2021-05-27 [2] CRAN (R 4.6.0)
## rhdf5 2.55.12 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rhdf5client 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rhdf5filters 1.23.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rhdf5lib 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rhinotypeR 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rhisat2 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RhpcBLASctl 0.23-42 2023-02-11 [2] CRAN (R 4.6.0)
## Rhtslib 3.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RiboCrypt 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RiboDiPA 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RiboProfiling 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ribor 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## riboSeqR 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ribosomeProfilingQC 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ridge 3.3 2022-04-11 [2] CRAN (R 4.6.0)
## rifi 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rifiComparative 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rigraphlib 1.3.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rigvf 1.3.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RImageJROI 0.1.3 2024-08-17 [2] CRAN (R 4.6.0)
## RImmPort 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rintrojs 0.3.4 2024-01-11 [2] CRAN (R 4.6.0)
## rio 1.2.4 2025-09-26 [2] CRAN (R 4.6.0)
## riskRegression 2025.09.17 2025-09-17 [2] CRAN (R 4.6.0)
## RISmed 2.3.0 2021-07-05 [2] CRAN (R 4.6.0)
## RITAN 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RITANdata 1.35.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RIVER 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rjags 4-17 2025-03-24 [2] CRAN (R 4.6.0)
## rJava 1.0-11 2024-01-26 [2] CRAN (R 4.6.0)
## RJMCMCNucleosomes 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rjson 0.2.23 2024-09-16 [2] CRAN (R 4.6.0)
## rjsoncons 1.3.2 2025-03-15 [2] CRAN (R 4.6.0)
## RJSONIO 2.0.0 2025-04-05 [2] CRAN (R 4.6.0)
## Rlab 4.0 2022-05-04 [2] CRAN (R 4.6.0)
## rlang 1.1.6 2025-04-11 [2] CRAN (R 4.6.0)
## RLassoCox 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rlecuyer 0.3-8 2023-12-02 [2] CRAN (R 4.6.0)
## rlist 0.4.6.2 2021-09-03 [2] CRAN (R 4.6.0)
## RLMM 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RLRsim 3.1-9 2025-11-28 [2] CRAN (R 4.6.0)
## Rmagpie 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RMariaDB 1.3.4 2025-02-24 [2] CRAN (R 4.6.0)
## rmarkdown 2.30 2025-09-28 [2] CRAN (R 4.6.0)
## RMassBank 3.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RMassBankData 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## rmcorr 0.7.0 2024-07-26 [2] CRAN (R 4.6.0)
## rmdformats 1.0.4 2022-05-17 [2] CRAN (R 4.6.0)
## rmelting 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rmeta 3.0 2018-03-20 [2] CRAN (R 4.6.0)
## rmio 0.4.0 2022-02-17 [2] CRAN (R 4.6.0)
## Rmisc 1.5.1 2022-05-02 [2] CRAN (R 4.6.0)
## Rmixmod 2.1.10 2023-12-13 [2] CRAN (R 4.6.0)
## Rmmquant 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rmpfr 1.1-2 2025-10-27 [2] CRAN (R 4.6.0)
## rms 8.1-0 2025-10-14 [2] CRAN (R 4.6.0)
## rmspc 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RMTstat 0.3.1 2022-04-12 [2] CRAN (R 4.6.0)
## rmutil 1.1.10 2022-10-27 [2] CRAN (R 4.6.0)
## RMySQL 0.11.1 2025-04-01 [2] CRAN (R 4.6.0)
## rmzqc 0.7.0 2025-07-16 [2] CRAN (R 4.6.0)
## RNAAgeCalc 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RNAdecay 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rnaEditr 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RNAmodR.Data 1.25.0 2025-11-11 [2] Bioconductor 3.23 (R 4.6.0)
## RNAsense 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RNAseq123 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## rnaseqcomp 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RNAseqCovarImpute 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RNAseqData.HNRNPC.bam.chr14 0.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## rnaseqDTU 1.31.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## rnaseqGene 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## RnaSeqGeneEdgeRQL 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## RNASeqPower 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RnaSeqSampleSizeData 1.43.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## RnBeads 2.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RnBeads.hg19 1.43.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## RnBeads.hg38 1.43.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## RnBeads.mm9 1.43.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## rncl 0.8.8 2025-12-08 [2] CRAN (R 4.6.0)
## RNeXML 2.4.11 2023-02-01 [2] CRAN (R 4.6.0)
## rngtools 1.5.2 2021-09-20 [2] CRAN (R 4.6.0)
## rngWELL 0.10-10 2024-10-17 [2] CRAN (R 4.6.0)
## RNifti 1.8.0 2025-02-22 [2] CRAN (R 4.6.0)
## Rnits 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RNOmni 1.0.1.2 2023-09-11 [2] CRAN (R 4.6.0)
## roar 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## roastgsa 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## robin 2.0.0 2025-01-22 [2] CRAN (R 4.6.0)
## robslopes 1.1.3 2023-04-27 [2] CRAN (R 4.6.0)
## robust 0.7-5 2024-08-17 [2] CRAN (R 4.6.0)
## robustbase 0.99-6 2025-09-04 [2] CRAN (R 4.6.0)
## RobustRankAggreg 1.2.1 2022-10-03 [2] CRAN (R 4.6.0)
## ROC 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ROCit 2.1.2 2024-05-16 [2] CRAN (R 4.6.0)
## ROCpAI 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ROCR 1.0-11 2020-05-02 [2] CRAN (R 4.6.0)
## ROI 1.0-1 2023-04-20 [2] CRAN (R 4.6.0)
## ROI.plugin.lpsolve 1.0-2 2023-07-07 [2] CRAN (R 4.6.0)
## RolDE 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## roll 1.2.0 2025-08-22 [2] CRAN (R 4.6.0)
## rols 3.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ROntoTools 2.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rook 1.2 2022-11-07 [2] CRAN (R 4.6.0)
## rootSolve 1.8.2.4 2023-09-21 [2] CRAN (R 4.6.0)
## ropls 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## roptim 0.1.7 2025-10-03 [2] CRAN (R 4.6.0)
## ROSeq 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ROTS 2.3.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## roxygen2 7.3.3 2025-09-03 [2] CRAN (R 4.6.0)
## roxyglobals 1.0.0 2023-08-21 [2] CRAN (R 4.6.0)
## roxytest 0.0.2 2023-01-11 [2] CRAN (R 4.6.0)
## RPA 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rpart 4.1.24 2025-01-07 [2] CRAN (R 4.6.0)
## rpart.plot 3.1.3 2025-07-26 [2] CRAN (R 4.6.0)
## rphylopic 1.6.0 2025-11-18 [2] CRAN (R 4.6.0)
## RPMM 1.25 2017-02-28 [2] CRAN (R 4.6.0)
## RPostgres 1.4.8 2025-02-25 [2] CRAN (R 4.6.0)
## RPostgreSQL 0.7-8 2025-03-28 [2] CRAN (R 4.6.0)
## rprimer 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rprojroot 2.1.1 2025-08-26 [2] CRAN (R 4.6.0)
## RProtoBufLib 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rpx 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rqc 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rqt 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rqubic 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rrapply 1.2.8 2025-11-25 [2] CRAN (R 4.6.0)
## rrBLUP 4.6.3 2023-12-10 [2] CRAN (R 4.6.0)
## rrcov 1.7-7 2025-04-21 [2] CRAN (R 4.6.0)
## RRHO 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rrvgo 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rsample 1.3.1 2025-07-29 [2] CRAN (R 4.6.0)
## Rsamtools 2.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rScudo 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rsemmed 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RSeqAn 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RSKC 2.4.2 2016-08-28 [2] CRAN (R 4.6.0)
## rslurm 0.6.2 2023-02-24 [2] CRAN (R 4.6.0)
## rsm 2.10.6 2025-03-24 [2] CRAN (R 4.6.0)
## RSNNS 0.4-17 2023-11-30 [2] CRAN (R 4.6.0)
## Rsolnp 2.0.1 2025-06-30 [2] CRAN (R 4.6.0)
## rsparse 0.5.3 2025-02-17 [2] CRAN (R 4.6.0)
## RSpectra 0.16-2 2024-07-18 [2] CRAN (R 4.6.0)
## rSpectral 1.0.0.14 2025-12-07 [2] CRAN (R 4.6.0)
## rsq 2.7 2024-09-29 [2] CRAN (R 4.6.0)
## RSQLite 2.4.5 2025-11-30 [2] CRAN (R 4.6.0)
## rstan 2.32.7 2025-03-10 [2] CRAN (R 4.6.0)
## rstantools 2.5.0 2025-09-01 [2] CRAN (R 4.6.0)
## rstatix 0.7.3 2025-10-18 [2] CRAN (R 4.6.0)
## rstudioapi 0.17.1 2024-10-22 [2] CRAN (R 4.6.0)
## Rsubread 2.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rsvd 1.0.5 2021-04-16 [2] CRAN (R 4.6.0)
## rsvg 2.7.0 2025-09-08 [2] CRAN (R 4.6.0)
## RSVSim 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rSWeeP 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RTCA 1.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.clinical 20151101.41.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.CNV 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.methylation 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.miRNASeq 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.mRNA 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.mutations 20151101.41.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.PANCAN12 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.rnaseq 20151101.41.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGA.RPPA 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RTCGAToolbox 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rTensor 1.4.9 2025-08-25 [2] CRAN (R 4.6.0)
## RTN 2.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RTNduals 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RTNsurvival 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RTopper 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rtpca 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rtracklayer 1.71.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RTriangle 1.6-0.15 2025-04-14 [2] CRAN (R 4.6.0)
## rTRM 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rTRMui 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Rtsne 0.17 2023-12-07 [2] CRAN (R 4.6.0)
## RUCova 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RUnit 0.4.33.1 2025-06-17 [2] CRAN (R 4.6.0)
## runonce 0.3.3 2025-10-07 [2] CRAN (R 4.6.0)
## ruv 0.9.7.1 2019-08-30 [2] CRAN (R 4.6.0)
## RUVcorr 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RUVnormalize 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RUVnormalizeData 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## RUVSeq 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rvcheck 0.2.1 2021-10-22 [2] CRAN (R 4.6.0)
## rversions 3.0.0 2025-10-09 [2] CRAN (R 4.6.0)
## rvest 1.0.5 2025-08-29 [2] CRAN (R 4.6.0)
## rvinecopulib 0.7.3.1.0 2025-06-13 [2] CRAN (R 4.6.0)
## Rvisdiff 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RVS 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## RWeka 0.4-46 2023-03-07 [2] CRAN (R 4.6.0)
## RWekajars 3.9.3-2 2019-10-19 [2] CRAN (R 4.6.0)
## rWikiPathways 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## rworkflows 1.0.6 2025-01-23 [2] CRAN (R 4.6.0)
## s2 1.1.9 2025-05-23 [2] CRAN (R 4.6.0)
## S4Arrays 1.11.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## S4Vectors 0.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## S7 0.2.1 2025-11-14 [2] CRAN (R 4.6.0)
## sabre 0.4.3 2022-08-17 [2] CRAN (R 4.6.0)
## safe 3.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## safetensors 0.2.0 2025-08-18 [2] CRAN (R 4.6.0)
## sagenhaft 1.81.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SAIGEgds 2.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sampleClassifier 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sampleClassifierData 1.35.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## sampling 2.11 2025-07-10 [2] CRAN (R 4.6.0)
## SamSPECTRAL 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sandwich 3.1-1 2024-09-15 [2] CRAN (R 4.6.0)
## sangeranalyseR 1.21.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sangerseqR 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SanityR 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SANTA 2.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sarks 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## saseR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sass 0.4.10 2025-04-11 [2] CRAN (R 4.6.0)
## satuRn 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SAVER 1.1.2 2019-11-13 [2] CRAN (R 4.6.0)
## SBGNview 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SBGNview.data 1.25.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## SBMLR 2.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SC3 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scaeData 1.7.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## scafari 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Scale4C 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ScaledMatrix 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scales 1.4.0 2025-04-24 [2] CRAN (R 4.6.0)
## scam 1.2-20 2025-10-14 [2] CRAN (R 4.6.0)
## SCAN.UPC 2.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scanMiR 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scanMiRApp 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scanMiRData 1.17.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## scAnnotatR 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCANVIS 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCArray 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCArray.sat 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scater 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scatterHatch 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scattermore 1.2 2023-06-12 [2] CRAN (R 4.6.0)
## scatterpie 0.2.6 2025-09-12 [2] CRAN (R 4.6.0)
## scatterplot3d 0.3-44 2023-05-05 [2] CRAN (R 4.6.0)
## scBFA 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCBN 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scBubbletree 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scCB2 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scClassify 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sccomp 2.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sccore 1.0.6 2025-04-13 [2] CRAN (R 4.6.0)
## scCustomize 3.2.3 2025-12-09 [2] CRAN (R 4.6.0)
## scDataviz 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scDblFinder 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scDD 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scDDboost 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scde 2.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scDesign3 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scDiagnostics 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scDotPlot 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scds 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCFA 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scFeatureFilter 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scFeatures 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scGPS 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scGraphVerse 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sched 1.0.3 2024-10-02 [2] CRAN (R 4.6.0)
## schex 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scHiCcompare 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scHOT 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scico 1.5.0 2023-08-14 [2] CRAN (R 4.6.0)
## scider 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scifer 1.13.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scLANE 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scmap 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scMerge 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scMET 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scmeth 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scMitoMut 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scMultiome 1.11.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## scMultiSim 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCnorm 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scone 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Sconify 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCOPE 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scoreInvHap 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scoup 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scp 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scPCA 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scpdata 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## scPipe 2.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SCpubr 3.0.0 2025-08-20 [2] CRAN (R 4.6.0)
## scQTLtools 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scran 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scrapper 1.5.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scReClassify 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scRecover 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## screenCounter 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ScreenR 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scRepertoire 2.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scrime 1.3.5 2018-12-01 [2] CRAN (R 4.6.0)
## scRNAseq 2.25.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## scRNAseqApp 1.11.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scruff 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scry 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scrypt 0.1.6 2023-01-29 [2] CRAN (R 4.6.0)
## scs 3.2.7 2025-04-14 [2] CRAN (R 4.6.0)
## scShapes 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scTensor 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scTGIF 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scTHI 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scTHI.data 1.23.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## sctransform 0.4.2 2025-04-30 [2] CRAN (R 4.6.0)
## scTreeViz 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scuttle 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## scviR 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sda 1.3.9 2025-04-08 [2] CRAN (R 4.6.0)
## SDAMS 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seahtrue 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sechm 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seewave 2.2.4 2025-08-19 [2] CRAN (R 4.6.0)
## segclust2d 0.3.3 2024-04-24 [2] CRAN (R 4.6.0)
## segmented 2.1-4 2025-02-28 [2] CRAN (R 4.6.0)
## segmenter 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## segmentSeq 2.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## selectKSigs 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## selectr 0.5-0 2025-11-21 [2] CRAN (R 4.6.0)
## SELEX 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SemDist 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## semisup 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sendmailR 1.4-0 2023-01-12 [2] CRAN (R 4.6.0)
## seq.hotSPOT 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seq2pathway 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seq2pathway.data 1.43.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## SeqArray 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seqCAT 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seqcombo 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SeqGate 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SeqGSEA 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Seqinfo 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seqinr 4.2-36 2023-12-08 [2] CRAN (R 4.6.0)
## seqLogo 1.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seqmagick 0.1.7 2024-01-09 [2] CRAN (R 4.6.0)
## seqminer 9.7 2024-10-02 [2] CRAN (R 4.6.0)
## seqpac 1.11.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## seqPattern 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seqsetvis 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SeqSQC 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sequencing 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## SeqVarTools 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SEraster 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## seriation 1.5.8 2025-08-20 [2] CRAN (R 4.6.0)
## servr 0.32 2024-10-04 [2] CRAN (R 4.6.0)
## sesame 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sesameData 1.29.7 2025-11-25 [2] Bioconductor 3.23 (R 4.6.0)
## sessioninfo 1.2.3 2025-02-05 [2] CRAN (R 4.6.0)
## SETA 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SEtools 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## setRNG 2024.2-1 2024-02-18 [2] CRAN (R 4.6.0)
## sets 1.0-25 2023-12-06 [2] CRAN (R 4.6.0)
## settings 0.2.7 2021-05-07 [2] CRAN (R 4.6.0)
## Seurat 5.3.1 2025-10-29 [2] CRAN (R 4.6.0)
## SeuratObject 5.2.0 2025-08-27 [2] CRAN (R 4.6.0)
## sevenbridges 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sevenC 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sf 1.0-23 2025-11-28 [2] CRAN (R 4.6.0)
## sfarrow 0.4.1 2021-10-27 [2] CRAN (R 4.6.0)
## SFEData 1.13.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## sfheaders 0.4.5 2025-11-25 [2] CRAN (R 4.6.0)
## sfsmisc 1.1-23 2025-11-21 [2] CRAN (R 4.6.0)
## sftime 0.3.1 2025-08-19 [2] CRAN (R 4.6.0)
## SGCP 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sgdGMF 1.0.1 2025-05-17 [2] CRAN (R 4.6.0)
## sgeostat 1.0-27 2016-02-03 [2] CRAN (R 4.6.0)
## sgof 2.3.5 2024-07-17 [2] CRAN (R 4.6.0)
## SGSeq 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## shades 1.4.0 2019-08-02 [2] CRAN (R 4.6.0)
## shadowtext 0.1.6 2025-08-24 [2] CRAN (R 4.6.0)
## shape 1.4.6.1 2024-02-23 [2] CRAN (R 4.6.0)
## shapefiles 0.7.2 2022-08-25 [2] CRAN (R 4.6.0)
## shapr 1.0.6 2025-11-17 [2] CRAN (R 4.6.0)
## SharedObject 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## shiny 1.12.1 2025-12-09 [2] CRAN (R 4.6.0)
## shiny.gosling 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## shiny.react 0.4.0 2024-05-20 [2] CRAN (R 4.6.0)
## shinyAce 0.4.4 2025-02-03 [2] CRAN (R 4.6.0)
## shinyalert 3.1.0 2024-04-27 [2] CRAN (R 4.6.0)
## shinybiocloader 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## shinyBS 0.61.1 2022-04-17 [2] CRAN (R 4.6.0)
## shinybusy 0.3.3 2024-03-09 [2] CRAN (R 4.6.0)
## shinycssloaders 1.1.0 2024-07-30 [2] CRAN (R 4.6.0)
## shinycustomloader 0.9.0 2018-03-27 [2] CRAN (R 4.6.0)
## shinyCyJS 1.0.0 2023-09-26 [2] CRAN (R 4.6.0)
## shinydashboard 0.7.3 2025-04-21 [2] CRAN (R 4.6.0)
## shinydashboardPlus 2.0.6 2025-08-25 [2] CRAN (R 4.6.0)
## shinyDSP 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## shinyepico 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## shinyFeedback 0.4.0 2021-09-23 [2] CRAN (R 4.6.0)
## shinyFiles 0.9.3 2022-08-19 [2] CRAN (R 4.6.0)
## shinyHeatmaply 0.2.0 2020-04-06 [2] CRAN (R 4.6.0)
## shinyhelper 0.3.2 2019-11-09 [2] CRAN (R 4.6.0)
## shinyjqui 0.4.1 2022-02-03 [2] CRAN (R 4.6.0)
## shinyjs 2.1.0 2021-12-23 [2] CRAN (R 4.6.0)
## shinylogs 0.2.1 2022-04-18 [2] CRAN (R 4.6.0)
## shinymanager 1.0.410 2022-09-27 [2] CRAN (R 4.6.0)
## shinyMatrix 0.8.0 2024-04-10 [2] CRAN (R 4.6.0)
## shinymeta 0.2.1 2025-04-11 [2] CRAN (R 4.6.0)
## shinyMethyl 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## shinyMethylData 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## shinyscreenshot 0.2.1 2023-08-21 [2] CRAN (R 4.6.0)
## shinytest 1.6.1 2024-05-30 [2] CRAN (R 4.6.0)
## shinytest2 0.4.1 2025-04-11 [2] CRAN (R 4.6.0)
## shinythemes 1.2.0 2021-01-25 [2] CRAN (R 4.6.0)
## shinytitle 0.1.0 2021-06-16 [2] CRAN (R 4.6.0)
## shinytoastr 2.2.0 2023-08-30 [2] CRAN (R 4.6.0)
## shinyTree 0.3.1 2023-08-07 [2] CRAN (R 4.6.0)
## shinyvalidate 0.1.3 2023-10-04 [2] CRAN (R 4.6.0)
## shinyWidgets 0.9.0 2025-02-21 [2] CRAN (R 4.6.0)
## ShortRead 1.69.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## showimage 1.0.0 2018-01-24 [2] CRAN (R 4.6.0)
## showtext 0.9-7 2024-03-02 [2] CRAN (R 4.6.0)
## showtextdb 3.0 2020-06-04 [2] CRAN (R 4.6.0)
## SIAMCAT 2.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SICtools 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SIFT.Hsapiens.dbSNP132 1.0.2 2025-11-17 [2] Bioconductor
## SIFT.Hsapiens.dbSNP137 1.0.0 2025-11-17 [2] Bioconductor
## SigCheck 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sigclust 1.1.0.1 2022-06-27 [2] CRAN (R 4.6.0)
## sigFeature 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SigFuge 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## siggenes 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sights 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sigmajs 0.1.5 2020-06-18 [2] CRAN (R 4.6.0)
## Signac 1.16.0 2025-10-10 [2] CRAN (R 4.6.0)
## signal 1.8-1 2024-06-26 [2] CRAN (R 4.6.0)
## signalHsmm 1.5 2018-11-15 [2] CRAN (R 4.6.0)
## signatureSearch 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## signatureSearchData 1.25.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## signeR 2.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## signifinder 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sigora 3.1.1 2021-11-30 [2] CRAN (R 4.6.0)
## SigsPack 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sigsquared 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SIM 1.81.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SIMAT 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SimBu 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SIMD 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SimDesign 2.21 2025-09-18 [2] CRAN (R 4.6.0)
## SimFFPE 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## similaRpeak 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SIMLR 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## simona 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## simPIC 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## simpIntLists 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## simpleCache 0.4.2 2021-04-17 [2] CRAN (R 4.6.0)
## simpleSeg 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## simpleSingleCell 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## SimpleUpset 0.1.4 2025-11-29 [2] CRAN (R 4.6.0)
## simplifyEnrichment 2.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sincell 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SingleCellAlleleExperiment 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SingleCellExperiment 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SingleCellMultiModal 1.23.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## SingleCellSignalR 2.1.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## singleCellTK 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SingleMoleculeFootprintingData 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## SingleR 2.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SingleRBook 1.21.0 2025-12-17 [2] Bioconductor 3.23 (R 4.6.0)
## singscore 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SingscoreAMLMutations 1.27.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## SiPSiC 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sirt 4.2-133 2025-09-27 [2] CRAN (R 4.6.0)
## sitadela 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Site2Target 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sitePath 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sitmo 2.0.2 2021-10-13 [2] CRAN (R 4.6.0)
## sizepower 1.81.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sjlabelled 1.2.0 2022-04-10 [2] CRAN (R 4.6.0)
## sjmisc 2.8.11 2025-07-30 [2] CRAN (R 4.6.0)
## SKAT 2.2.5 2023-01-15 [2] CRAN (R 4.6.0)
## sketchR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## skewr 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## skmeans 0.2-18 2024-11-13 [2] CRAN (R 4.6.0)
## slam 0.1-55 2024-11-13 [2] CRAN (R 4.6.0)
## slider 0.3.3 2025-11-14 [2] CRAN (R 4.6.0)
## slingshot 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SLqPCR 1.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sm 2.2-6.0 2024-02-17 [2] CRAN (R 4.6.0)
## smacof 2.1-7 2024-10-10 [2] CRAN (R 4.6.0)
## SMAD 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## smartid 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SmartPhos 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SmartSVA 0.1.3 2017-05-28 [2] CRAN (R 4.6.0)
## smatr 3.4-8 2018-03-18 [2] CRAN (R 4.6.0)
## SMITE 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## smoof 1.6.0.3 2023-03-10 [2] CRAN (R 4.6.0)
## smoothclust 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## smoother 1.3 2024-04-03 [2] CRAN (R 4.6.0)
## smoothie 1.0-4 2024-11-28 [2] CRAN (R 4.6.0)
## smoothr 1.2.1 2025-10-21 [2] CRAN (R 4.6.0)
## smoppix 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## smurf 1.1.8 2025-09-19 [2] CRAN (R 4.6.0)
## sn 2.1.1 2023-04-04 [2] CRAN (R 4.6.0)
## sna 2.8 2024-09-08 [2] CRAN (R 4.6.0)
## SNAGEE 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SNAGEEdata 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## snakecase 0.11.1 2023-08-27 [2] CRAN (R 4.6.0)
## snapcount 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SNFtool 2.3.1 2021-06-11 [2] CRAN (R 4.6.0)
## snifter 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## snm 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## snow 0.4-4 2021-10-27 [2] CRAN (R 4.6.0)
## SnowballC 0.7.1 2023-04-25 [2] CRAN (R 4.6.0)
## snowfall 1.84-6.3 2023-11-26 [2] CRAN (R 4.6.0)
## SNPediaR 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SNPhood 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SNPhoodData 1.41.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## SNPlocs.Hsapiens.dbSNP144.GRCh37 0.99.20 2025-11-17 [2] Bioconductor
## SNPlocs.Hsapiens.dbSNP144.GRCh38 0.99.20 2025-11-17 [2] Bioconductor
## SNPlocs.Hsapiens.dbSNP155.GRCh37 0.99.24 2025-11-23 [2] Bioconductor
## SNPRelate 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## snpStats 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## softImpute 1.4-3 2025-05-12 [2] CRAN (R 4.6.0)
## soGGi 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## som 0.3-5.2 2024-09-18 [2] CRAN (R 4.6.0)
## SomaticCancerAlterations 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## SomaticSignatures 2.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SOMbrero 1.5.0 2025-10-06 [2] CRAN (R 4.6.0)
## SOMNiBUS 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sortable 0.5.0 2023-03-26 [2] CRAN (R 4.6.0)
## sosta 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SoupX 1.6.2 2022-11-01 [2] CRAN (R 4.6.0)
## sourcetools 0.1.7-1 2023-02-01 [2] CRAN (R 4.6.0)
## sp 2.2-0 2025-02-01 [2] CRAN (R 4.6.0)
## SpaceMarkers 2.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spacetime 1.3-3 2025-02-13 [2] CRAN (R 4.6.0)
## SpaceTrooper 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spacexr 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spam 2.11-1 2025-01-20 [2] CRAN (R 4.6.0)
## Spaniel 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpaNorm 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sparcl 1.0.4 2018-10-24 [2] CRAN (R 4.6.0)
## spARI 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sparkline 2.0 2016-11-12 [2] CRAN (R 4.6.0)
## sparklyr 1.9.3 2025-11-19 [2] CRAN (R 4.6.0)
## sparrow 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SparseArray 1.11.8 2025-12-09 [2] Bioconductor 3.23 (R 4.6.0)
## SparseDC 0.1.17 2018-01-04 [2] CRAN (R 4.6.0)
## SparseM 1.84-2 2024-07-17 [2] CRAN (R 4.6.0)
## sparseMatrixStats 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sparseMVN 0.2.2 2021-10-25 [2] CRAN (R 4.6.0)
## sparsenetgls 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sparsepca 0.1.2 2018-04-11 [2] CRAN (R 4.6.0)
## SparseSignatures 2.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sparsevctrs 0.3.4 2025-05-25 [2] CRAN (R 4.6.0)
## spaSim 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SPAtest 3.1.2 2020-09-04 [2] CRAN (R 4.6.0)
## spatial 7.3-18 2025-01-01 [2] CRAN (R 4.6.0)
## SpatialCPie 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialDatasets 1.9.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## spatialDE 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialDecon 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spatialEco 2.0-3 2025-09-30 [2] CRAN (R 4.6.0)
## SpatialExperiment 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialExperimentIO 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialExtremes 2.1-0 2022-04-19 [2] CRAN (R 4.6.0)
## spatialFDA 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialFeatureExperiment 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spatialHeatmap 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spatialLIBD 1.23.0 2025-11-06 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialOmicsOverlay 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialPack 0.4-1 2024-09-29 [2] CRAN (R 4.6.0)
## spatialreg 1.4-2 2025-09-06 [2] CRAN (R 4.6.0)
## spatialSimGP 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpatialTools 1.0.5 2023-07-18 [2] CRAN (R 4.6.0)
## spatstat 3.5-0 2025-12-01 [2] CRAN (R 4.6.0)
## spatstat.data 3.1-9 2025-10-18 [2] CRAN (R 4.6.0)
## spatstat.explore 3.6-0 2025-11-22 [2] CRAN (R 4.6.0)
## spatstat.geom 3.6-1 2025-11-20 [2] CRAN (R 4.6.0)
## spatstat.linnet 3.4-0 2025-11-29 [2] CRAN (R 4.6.0)
## spatstat.model 3.5-0 2025-11-28 [2] CRAN (R 4.6.0)
## spatstat.random 3.4-3 2025-11-21 [2] CRAN (R 4.6.0)
## spatstat.sparse 3.1-0 2024-06-21 [2] CRAN (R 4.6.0)
## spatstat.univar 3.1-5 2025-11-17 [2] CRAN (R 4.6.0)
## spatstat.utils 3.2-0 2025-09-20 [2] CRAN (R 4.6.0)
## spatzie 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spBayes 0.4-8 2024-09-23 [2] CRAN (R 4.6.0)
## spData 2.3.4 2025-01-08 [2] CRAN (R 4.6.0)
## spdep 1.4-1 2025-08-31 [2] CRAN (R 4.6.0)
## spdl 0.0.5 2023-06-18 [2] CRAN (R 4.6.0)
## speaq 2.7.0 2022-05-23 [2] CRAN (R 4.6.0)
## speckle 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## specL 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpeCond 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Spectra 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpectralTAD 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpectraQL 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpectriPy 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## speedglm 0.3-5 2023-05-06 [2] CRAN (R 4.6.0)
## spelling 2.3.2 2025-08-18 [2] CRAN (R 4.6.0)
## SPEM 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SPIA 2.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SPIAT 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SPICEY 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spicyR 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpiecEasi 1.99.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpikeIn 1.53.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## spikeLI 2.71.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spiky 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spillR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spkTools 1.67.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## splancs 2.01-45 2024-05-27 [2] CRAN (R 4.6.0)
## splatter 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpliceWiz 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SplicingFactory 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SplicingGraphs 1.51.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SplineDV 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## splines 4.6.0 2025-10-21 [?] local
## splineTimeR 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SPLINTER 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## splitstackshape 1.4.8 2019-04-21 [2] CRAN (R 4.6.0)
## splots 1.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## splus2R 1.3-5 2024-02-18 [2] CRAN (R 4.6.0)
## SPONGE 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spoon 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpotClean 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SPOTlight 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SpotSweeper 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spqn 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spqnData 1.23.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## spsComps 0.3.4.0 2025-07-23 [2] CRAN (R 4.6.0)
## SPsimSeq 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## spsUtil 0.2.2.1 2025-09-28 [2] CRAN (R 4.6.0)
## SQLDataFrame 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sqldf 0.4-11 2017-06-28 [2] CRAN (R 4.6.0)
## sqlq 1.0.1 2025-09-16 [2] CRAN (R 4.6.0)
## SQN 1.0.6 2022-06-10 [2] CRAN (R 4.6.0)
## squallms 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SQUAREM 2021.1 2021-01-13 [2] CRAN (R 4.6.0)
## squash 1.0.9 2020-02-20 [2] CRAN (R 4.6.0)
## sRACIPE 2.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SRAdb 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## srnadiff 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ssc 2.1-0 2019-12-15 [2] CRAN (R 4.6.0)
## sscu 2.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sSeq 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ssize 1.85.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sSNAPPY 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ssrch 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ssviz 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## st 1.2.7 2021-11-27 [2] CRAN (R 4.6.0)
## stable 1.1.6 2022-03-02 [2] CRAN (R 4.6.0)
## stabledist 0.7-2 2024-08-17 [2] CRAN (R 4.6.0)
## StabMap 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## stabs 0.6-4 2021-01-29 [2] CRAN (R 4.6.0)
## STADyUM 1.1.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## stageR 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## standR 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## StanHeaders 2.32.10 2024-07-15 [2] CRAN (R 4.6.0)
## stars 0.6-8 2025-02-01 [2] CRAN (R 4.6.0)
## startupmsg 1.0.0 2025-01-12 [2] CRAN (R 4.6.0)
## statebins 1.4.0 2020-07-08 [2] CRAN (R 4.6.0)
## STATegRa 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## StatescopeR 0.99.31 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Statial 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## statip 0.2.3 2019-11-17 [2] CRAN (R 4.6.0)
## statmod 1.5.1 2025-10-09 [2] CRAN (R 4.6.0)
## statnet.common 4.12.0 2025-05-30 [2] CRAN (R 4.6.0)
## P stats * 4.6.0 2025-10-21 [2] local
## stats4 4.6.0 2025-10-21 [?] local
## statTarget 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## stemHypoxia 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## stepNorm 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## STexampleData 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## stJoincount 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## stopwords 2.3 2021-10-28 [2] CRAN (R 4.6.0)
## storr 1.2.6 2025-04-15 [2] CRAN (R 4.6.0)
## stPipe 1.1.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## strandCheckR 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## strawr 0.0.92 2024-07-16 [2] CRAN (R 4.6.0)
## strex 2.0.1 2024-10-03 [2] CRAN (R 4.6.0)
## STRINGdb 2.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## stringdist 0.9.15 2025-01-10 [2] CRAN (R 4.6.0)
## stringfish 0.17.0 2025-07-13 [2] CRAN (R 4.6.0)
## stringi 1.8.7 2025-03-27 [2] CRAN (R 4.6.0)
## stringr 1.6.0 2025-11-04 [2] CRAN (R 4.6.0)
## strucchange 1.5-4 2024-09-02 [2] CRAN (R 4.6.0)
## struct 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Structstrings 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## structToolbox 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## StructuralVariantAnnotation 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## styler 1.11.0 2025-10-13 [2] CRAN (R 4.6.0)
## SubCellBarCode 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## subSeq 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SUITOR 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SummarizedExperiment 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## summarytools 1.1.4 2025-04-29 [2] CRAN (R 4.6.0)
## Summix 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SuperCell 1.0.1 2024-10-25 [2] CRAN (R 4.6.0)
## SuperCellCyto 1.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SuperExactTest 1.1.0 2022-03-23 [2] CRAN (R 4.6.0)
## superheat 0.1.0 2017-02-04 [2] CRAN (R 4.6.0)
## SuperLearner 2.0-29 2024-02-20 [2] CRAN (R 4.6.0)
## supersigs 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SuppDists 1.1-9.9 2025-03-24 [2] CRAN (R 4.6.0)
## surfaltr 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SurfR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## survClust 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## survcomp 1.61.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## survey 4.4-8 2025-08-28 [2] CRAN (R 4.6.0)
## survival 3.8-3 2024-12-17 [2] CRAN (R 4.6.0)
## survivalROC 1.0.3.1 2022-12-05 [2] CRAN (R 4.6.0)
## survivalsvm 0.0.6 2025-04-04 [2] CRAN (R 4.6.0)
## SurvMetrics 0.5.1 2025-02-05 [2] CRAN (R 4.6.0)
## survminer 0.5.1 2025-09-02 [2] CRAN (R 4.6.0)
## survMisc 0.5.6 2022-04-07 [2] CRAN (R 4.6.0)
## survtype 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sva 3.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## svaNUMT 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## svaRetro 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## svd 0.5.8 2025-01-10 [2] CRAN (R 4.6.0)
## svglite 2.2.2 2025-10-21 [2] CRAN (R 4.6.0)
## svgPanZoom 0.3.4 2020-02-15 [2] CRAN (R 4.6.0)
## SVMDO 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## svMisc 1.4.3 2024-11-14 [2] CRAN (R 4.6.0)
## SVP 1.3.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## svUnit 1.0.8 2025-08-26 [2] CRAN (R 4.6.0)
## swamp 1.5.1 2019-12-06 [2] CRAN (R 4.6.0)
## SWATH2stats 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SwathXtend 2.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## swfdr 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## switchBox 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## switchde 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sylly 0.1-6 2020-09-20 [2] CRAN (R 4.6.0)
## sylly.en 0.1-3 2018-03-19 [2] CRAN (R 4.6.0)
## synapsis 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## synergyfinder 3.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SynExtend 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## synlet 2.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## SynMut 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## syntenet 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## sys 3.4.3 2024-10-04 [2] CRAN (R 4.6.0)
## sysfonts 0.8.9 2024-03-02 [2] CRAN (R 4.6.0)
## systemfonts 1.3.1 2025-10-01 [2] CRAN (R 4.6.0)
## systemPipeR 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## systemPipeRdata 2.15.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## systemPipeShiny 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## systemPipeTools 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## syuzhet 1.0.7 2023-08-11 [2] CRAN (R 4.6.0)
## TabulaMurisSenisData 1.17.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## tadar 1.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TADCompare 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tagcloud 0.7.0 2025-06-28 [2] CRAN (R 4.6.0)
## TAM 4.3-25 2025-08-28 [2] CRAN (R 4.6.0)
## tanggle 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TAPseq 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## target 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TargetDecoy 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TargetScore 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TargetScoreData 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## TargetSearch 2.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TargetSearchData 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## tartare 1.25.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## TaxSEA 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TBSignatureProfiler 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TBX20BamSubset 1.47.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## TCA 1.2.1 2021-02-14 [2] CRAN (R 4.6.0)
## TCC 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TCGAbiolinks 2.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TCGAbiolinksGUI.data 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## TCGAMethylation450k 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## TCGAutils 1.31.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TCGAWorkflowData 1.35.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## tcltk 4.6.0 2025-10-21 [?] local
## tcltk2 1.6.1 2025-06-01 [2] CRAN (R 4.6.0)
## TCseq 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TDbasedUFE 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TDbasedUFEadv 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TeachingDemos 2.13 2024-02-16 [2] CRAN (R 4.6.0)
## TEKRABber 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TENET 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TENET.AnnotationHub 1.1.0 2025-10-29 [2] Bioconductor 3.22 (R 4.6.0)
## TENET.ExperimentHub 1.3.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## tensor 1.5.1 2025-06-17 [2] CRAN (R 4.6.0)
## tensorA 0.36.2.1 2023-12-13 [2] CRAN (R 4.6.0)
## tensorflow 2.20.0 2025-08-22 [2] CRAN (R 4.6.0)
## TENxBrainData 1.31.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## TENxBUSData 1.25.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## TENxIO 1.13.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TENxPBMCData 1.29.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## tenXplore 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TENxVisiumData 1.19.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## TENxXeniumData 1.7.0 2025-11-18 [2] Bioconductor 3.23 (R 4.6.0)
## TEQC 4.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## terapadog 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ternarynet 1.55.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## terra 1.8-86 2025-11-28 [2] CRAN (R 4.6.0)
## terraTCGAdata 1.15.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tester 0.3.0 2025-09-22 [2] CRAN (R 4.6.0)
## testthat 3.3.1 2025-11-25 [2] CRAN (R 4.6.0)
## text2vec 0.6.6 2025-12-01 [2] CRAN (R 4.6.0)
## textclean 0.9.3 2018-07-23 [2] CRAN (R 4.6.0)
## textshape 1.7.5 2024-04-01 [2] CRAN (R 4.6.0)
## textshaping 1.0.4 2025-10-10 [2] CRAN (R 4.6.0)
## textstem 0.1.4 2018-04-09 [2] CRAN (R 4.6.0)
## TFARM 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tfautograph 0.3.2 2021-09-17 [2] CRAN (R 4.6.0)
## TFBSTools 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TFEA.ChIP 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TFHAZ 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TFisher 0.2.0 2018-03-21 [2] CRAN (R 4.6.0)
## TFMPvalue 0.0.9 2022-10-21 [2] CRAN (R 4.6.0)
## tfruns 1.5.4 2025-08-20 [2] CRAN (R 4.6.0)
## TFutils 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TH.data 1.1-5 2025-11-17 [2] CRAN (R 4.6.0)
## threejs 0.3.4 2025-04-21 [2] CRAN (R 4.6.0)
## tibble 3.3.0 2025-06-08 [2] CRAN (R 4.6.0)
## tictoc 1.2.1 2024-03-18 [2] CRAN (R 4.6.0)
## tidybayes 3.0.7 2024-09-15 [2] CRAN (R 4.6.0)
## tidybulk 2.1.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidyCoverage 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidydr 0.0.6 2025-07-25 [2] CRAN (R 4.6.0)
## tidyFlowCore 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidygate 1.0.19 2025-12-10 [2] CRAN (R 4.6.0)
## tidygraph 1.3.1 2024-01-30 [2] CRAN (R 4.6.0)
## tidyHeatmap 1.13.1 2025-10-30 [2] CRAN (R 4.6.0)
## tidyjson 0.3.2 2023-01-07 [2] CRAN (R 4.6.0)
## tidyomics 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidyr 1.3.1 2024-01-24 [2] CRAN (R 4.6.0)
## tidysbml 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidyselect 1.2.1 2024-03-11 [2] CRAN (R 4.6.0)
## tidyseurat 0.8.7 2025-11-10 [2] CRAN (R 4.6.0)
## tidySingleCellExperiment 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidySpatialExperiment 1.7.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidySummarizedExperiment 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidytext 0.4.3 2025-07-25 [2] CRAN (R 4.6.0)
## tidytof 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tidytree 0.4.6 2023-12-12 [2] CRAN (R 4.6.0)
## tidyverse 2.0.0 2023-02-22 [2] CRAN (R 4.6.0)
## tidyxl 1.0.10 2023-12-21 [2] CRAN (R 4.6.0)
## tiff 0.1-12 2023-11-28 [2] CRAN (R 4.6.0)
## tightClust 1.1 2018-06-12 [2] CRAN (R 4.6.0)
## tigre 1.65.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tiledb 0.33.0 2025-10-01 [2] CRAN (R 4.6.0)
## TileDBArray 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tilingArray 1.89.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## timechange 0.3.0 2024-01-18 [2] CRAN (R 4.6.0)
## timecourse 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## timecoursedata 1.21.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## timeDate 4051.111 2025-10-17 [2] CRAN (R 4.6.0)
## timeOmics 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## timereg 2.0.7 2025-08-18 [2] CRAN (R 4.6.0)
## timescape 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## timeSeries 4041.111 2024-09-22 [2] CRAN (R 4.6.0)
## timsac 1.3.8-4 2023-09-30 [2] CRAN (R 4.6.0)
## TIN 1.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tinytest 1.4.1 2023-02-22 [2] CRAN (R 4.6.0)
## tinytex 0.58 2025-11-19 [2] CRAN (R 4.6.0)
## tippy 0.1.0 2021-01-11 [2] CRAN (R 4.6.0)
## TissueEnrich 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tissueTreg 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## tkrplot 0.0-30 2025-05-26 [2] CRAN (R 4.6.0)
## tkWidgets 1.89.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tLOH 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tm 0.7-17 2025-12-10 [2] CRAN (R 4.6.0)
## TMB 1.9.18 2025-10-13 [2] CRAN (R 4.6.0)
## TMixClust 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TMSig 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tmvtnorm 1.7 2025-09-01 [2] CRAN (R 4.6.0)
## tnet 3.0.16 2020-02-24 [2] CRAN (R 4.6.0)
## TnT 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TOAST 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## toastui 0.4.0 2025-04-03 [2] CRAN (R 4.6.0)
## tokenizers 0.3.0 2022-12-22 [2] CRAN (R 4.6.0)
## tomoda 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tomoseqr 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## P tools 4.6.0 2025-10-21 [2] local
## toOrdinal 1.3-0.0 2022-02-24 [2] CRAN (R 4.6.0)
## TOP 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## topconfects 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TopDom 0.10.1 2021-05-06 [2] CRAN (R 4.6.0)
## topdownr 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## topdownrdata 1.33.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## topGO 2.63.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## topicdoc 0.1.1 2022-07-17 [2] CRAN (R 4.6.0)
## topicmodels 0.2-17 2024-08-14 [2] CRAN (R 4.6.0)
## topologyGSA 1.5.0 2023-09-25 [2] CRAN (R 4.6.0)
## torch 0.16.3 2025-11-02 [2] CRAN (R 4.6.0)
## ToxicoGx 2.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TPP 3.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TPP2D 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tpSVG 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tracktables 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## trackViewer 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tractor.base 3.5.0 2025-10-29 [2] CRAN (R 4.6.0)
## tradeSeq 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TrajectoryGeometry 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TrajectoryUtils 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TraMineR 2.2-12 2025-06-29 [2] CRAN (R 4.6.0)
## transcriptogramer 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## transcriptR 1.39.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## transformGamPoi 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## transformr 0.1.5 2024-02-26 [2] CRAN (R 4.6.0)
## transite 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tRanslatome 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## transmogR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## transomics2cytoscape 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## transport 0.15-4 2024-09-16 [2] CRAN (R 4.6.0)
## traseR 1.41.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TreeAndLeaf 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## treeclimbR 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## treeio 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## treekoR 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## treemap 2.4-4 2023-05-25 [2] CRAN (R 4.6.0)
## TreeSummarizedExperiment 2.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TreeTools 2.0.0 2025-09-23 [2] CRAN (R 4.6.0)
## TREG 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Trendy 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TRESS 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tricycle 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TrIdent 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## triebeard 0.4.1 2023-03-04 [2] CRAN (R 4.6.0)
## trio 3.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## triplex 1.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tripr 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TRONCO 2.43.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## truncdist 1.0-2 2016-08-30 [2] CRAN (R 4.6.0)
## truncnorm 1.0-9 2023-03-20 [2] CRAN (R 4.6.0)
## trust 0.1-8 2020-01-10 [2] CRAN (R 4.6.0)
## TSAR 1.9.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TSCAN 1.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tseries 0.10-58 2024-09-23 [2] CRAN (R 4.6.0)
## tsne 0.1-3.1 2022-03-28 [2] CRAN (R 4.6.0)
## TSP 1.2.6 2025-11-27 [2] CRAN (R 4.6.0)
## ttgsea 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TTMap 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TTR 0.24.4 2023-11-28 [2] CRAN (R 4.6.0)
## ttservice 0.5.3 2025-07-10 [2] CRAN (R 4.6.0)
## TumourMethData 1.9.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## tuneR 1.4.7 2024-04-17 [2] CRAN (R 4.6.0)
## TurboNorm 1.59.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TVTB 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tweeDEseq 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tweeDEseqCountData 1.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## tweedie 2.3.5 2022-08-17 [2] CRAN (R 4.6.0)
## tweenr 2.0.3 2024-02-26 [2] CRAN (R 4.6.0)
## twilight 1.87.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## twoddpcr 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## txcutr 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## TxDb.Athaliana.BioMart.plantsmart22 3.0.1 2025-11-17 [2] Bioconductor
## TxDb.Athaliana.BioMart.plantsmart28 3.2.2 2025-11-17 [2] Bioconductor
## TxDb.Celegans.UCSC.ce11.ensGene 3.15.0 2025-11-17 [2] Bioconductor
## TxDb.Celegans.UCSC.ce11.refGene 3.4.6 2025-11-17 [2] Bioconductor
## TxDb.Celegans.UCSC.ce6.ensGene 3.2.2 2025-11-17 [2] Bioconductor
## TxDb.Dmelanogaster.UCSC.dm3.ensGene 3.2.2 2025-11-17 [2] Bioconductor
## TxDb.Dmelanogaster.UCSC.dm6.ensGene 3.12.0 2025-11-17 [2] Bioconductor
## TxDb.Drerio.UCSC.danRer10.refGene 3.4.6 2025-11-17 [2] Bioconductor
## TxDb.Drerio.UCSC.danRer11.refGene 3.4.6 2025-11-17 [2] Bioconductor
## TxDb.Ggallus.UCSC.galGal5.refGene 3.12.0 2025-11-17 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg18.knownGene 3.2.2 2025-11-17 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg19.knownGene 3.22.1 2025-11-17 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts 3.2.2 2025-11-17 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg19.refGene 3.22.0 2025-11-17 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg38.knownGene 3.22.0 2025-11-17 [2] Bioconductor
## TxDb.Mmulatta.UCSC.rheMac10.refGene 3.14.0 2025-11-17 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm10.ensGene 3.4.0 2025-11-17 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm10.knownGene 3.10.0 2025-11-17 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm39.knownGene 3.22.0 2025-11-17 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm39.refGene 3.19.0 2025-11-17 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm9.knownGene 3.2.2 2025-11-17 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn4.ensGene 3.2.2 2025-11-17 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn5.refGene 3.12.0 2025-11-17 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn6.refGene 3.4.6 2025-11-17 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn7.refGene 3.15.0 2025-11-17 [2] Bioconductor
## TxDb.Scerevisiae.UCSC.sacCer3.sgdGene 3.2.2 2025-11-17 [2] Bioconductor
## txdbmaker 1.7.3 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tximeta 1.29.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tximport 1.39.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## tximportData 1.39.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## tzdb 0.5.0 2025-03-15 [2] CRAN (R 4.6.0)
## UCell 2.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## ucminf 1.2.2 2024-06-24 [2] CRAN (R 4.6.0)
## UCSC.utils 1.7.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Ularcirc 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## umap 0.2.10.0 2023-02-01 [2] CRAN (R 4.6.0)
## UMI4Cats 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## uncoverappLib 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## UNDO 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## unifiedWMWqPCR 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## UniProt.ws 2.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## UniProtKeywords 0.99.7 2023-09-27 [2] Bioconductor
## uniqtag 1.0.1 2022-06-10 [2] CRAN (R 4.6.0)
## Uniquorn 2.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## units 1.0-0 2025-10-09 [2] CRAN (R 4.6.0)
## unittest 1.7-0 2024-08-16 [2] CRAN (R 4.6.0)
## universalmotif 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## unmarked 1.5.1 2025-09-26 [2] CRAN (R 4.6.0)
## updateObject 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## UPDhmm 1.7.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## upsetjs 1.11.1 2022-07-13 [2] CRAN (R 4.6.0)
## UpSetR 1.4.0 2019-05-22 [2] CRAN (R 4.6.0)
## urca 1.3-4 2024-05-27 [2] CRAN (R 4.6.0)
## urlchecker 1.0.1 2021-11-30 [2] CRAN (R 4.6.0)
## urltools 1.7.3.1 2025-06-12 [2] CRAN (R 4.6.0)
## usethis 3.2.1 2025-09-06 [2] CRAN (R 4.6.0)
## uSORT 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## utf8 1.2.6 2025-06-08 [2] CRAN (R 4.6.0)
## P utils * 4.6.0 2025-10-21 [2] local
## uuid 1.2-1 2024-07-29 [2] CRAN (R 4.6.0)
## uwot 0.2.4 2025-11-10 [2] CRAN (R 4.6.0)
## V8 8.0.1 2025-10-10 [2] CRAN (R 4.6.0)
## VAExprs 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## validate 1.1.7 2025-12-10 [2] CRAN (R 4.6.0)
## VAM 1.1.0 2023-11-05 [2] CRAN (R 4.6.0)
## VanillaICE 1.73.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VarCon 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## varhandle 2.0.6 2023-09-30 [2] CRAN (R 4.6.0)
## variancePartition 1.41.2 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VariantAnnotation 1.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VariantExperiment 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VariantFiltering 1.47.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## variants 1.35.0 2025-12-16 [2] Bioconductor 3.23 (R 4.6.0)
## VariantTools 1.53.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## varSelRF 0.7-8 2017-07-10 [2] CRAN (R 4.6.0)
## VaSP 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vbmp 1.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vcd 1.4-13 2024-09-16 [2] CRAN (R 4.6.0)
## VCFArray 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vcfR 1.15.0 2023-12-08 [2] CRAN (R 4.6.0)
## vctrs 0.6.5 2023-12-01 [2] CRAN (R 4.6.0)
## vdiffr 1.0.8 2024-10-31 [2] CRAN (R 4.6.0)
## VDJdive 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VegaMC 3.49.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vegan 2.7-2 2025-10-08 [2] CRAN (R 4.6.0)
## vegclust 2.0.3 2025-05-19 [2] CRAN (R 4.6.0)
## velociraptor 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## veloviz 1.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## venn 1.12 2024-01-08 [2] CRAN (R 4.6.0)
## VennDetail 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VennDiagram 1.7.3 2022-04-12 [2] CRAN (R 4.6.0)
## venneuler 1.1-4 2024-01-14 [2] CRAN (R 4.6.0)
## verification 1.45 2025-08-21 [2] CRAN (R 4.6.0)
## VERSO 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VGAM 1.1-14 2025-12-04 [2] CRAN (R 4.6.0)
## vidger 1.31.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VIM 6.2.6 2025-09-18 [2] CRAN (R 4.6.0)
## vioplot 0.5.1 2025-02-23 [2] CRAN (R 4.6.0)
## viper 1.45.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vipor 0.4.7 2023-12-18 [2] CRAN (R 4.6.0)
## viridis 0.6.5 2024-01-29 [2] CRAN (R 4.6.0)
## viridisLite 0.4.2 2023-05-02 [2] CRAN (R 4.6.0)
## visdat 0.6.0 2023-02-02 [2] CRAN (R 4.6.0)
## ViSEAGO 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VisiumIO 1.7.4 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## visiumStitched 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## visNetwork 2.1.4 2025-09-04 [2] CRAN (R 4.6.0)
## vissE 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vmrseq 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Voyager 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## VplotR 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vroom 1.6.6 2025-09-19 [2] CRAN (R 4.6.0)
## vsclust 1.13.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vsn 3.79.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vtpnet 0.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vulcan 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## vulcandata 1.33.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## waddR 1.25.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## waiter 0.2.5.1 2025-09-23 [2] CRAN (R 4.6.0)
## waldo 0.6.2 2025-07-11 [2] CRAN (R 4.6.0)
## warp 0.2.2 2025-11-14 [2] CRAN (R 4.6.0)
## wateRmelon 2.17.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## waveslim 1.8.5 2024-06-04 [2] CRAN (R 4.6.0)
## wavethresh 4.7.3 2024-08-19 [2] CRAN (R 4.6.0)
## wdm 0.2.6 2025-01-07 [2] CRAN (R 4.6.0)
## weaver 1.77.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## webbioc 1.83.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## webchem 1.3.1 2025-07-16 [2] CRAN (R 4.6.0)
## webdriver 1.0.6 2021-01-12 [2] CRAN (R 4.6.0)
## WeberDivechaLCdata 1.13.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## webshot 0.5.5 2023-06-26 [2] CRAN (R 4.6.0)
## websocket 1.4.4 2025-04-10 [2] CRAN (R 4.6.0)
## webutils 1.2.2 2024-10-04 [2] CRAN (R 4.6.0)
## WeightedCluster 2.0 2025-12-10 [2] CRAN (R 4.6.0)
## weights 1.1.2 2025-06-18 [2] CRAN (R 4.6.0)
## WeightSVM 1.7-16 2024-10-12 [2] CRAN (R 4.6.0)
## weitrix 1.23.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## WES.1KG.WUGSC 1.43.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## wesanderson 0.3.7 2023-10-31 [2] CRAN (R 4.6.0)
## WGCNA 1.73 2024-09-18 [2] CRAN (R 4.6.0)
## WGSmapp 1.23.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## wheatmap 0.2.0 2022-02-27 [2] CRAN (R 4.6.0)
## whisker 0.4.1 2022-12-05 [2] CRAN (R 4.6.0)
## widgetTools 1.89.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## widyr 0.1.5 2022-09-13 [2] CRAN (R 4.6.0)
## wiggleplotr 1.35.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## withr 3.0.2 2024-10-28 [2] CRAN (R 4.6.0)
## wk 0.9.4 2024-10-11 [2] CRAN (R 4.6.0)
## word2vec 0.4.1 2025-11-27 [2] CRAN (R 4.6.0)
## wordcloud 2.6 2018-08-24 [2] CRAN (R 4.6.0)
## wordcloud2 0.2.1 2018-01-03 [2] CRAN (R 4.6.0)
## wpm 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## wppi 1.19.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Wrench 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## writexl 1.5.4 2025-04-15 [2] CRAN (R 4.6.0)
## WriteXLS 6.8.0 2025-05-22 [2] CRAN (R 4.6.0)
## wrMisc 1.15.4 2025-06-18 [2] CRAN (R 4.6.0)
## wrswoR 1.2.0 2025-11-10 [2] CRAN (R 4.6.0)
## XAItest 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## xCell2 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## xcms 4.9.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## xcore 1.15.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## xcoredata 1.15.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## XDE 2.57.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## XeniumIO 1.3.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## xenLite 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## Xeva 1.27.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## xfun 0.54 2025-10-30 [2] CRAN (R 4.6.0)
## xgboost 3.1.2.1 2025-12-03 [2] CRAN (R 4.6.0)
## XINA 1.29.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## XLConnect 1.2.2 2025-05-26 [2] CRAN (R 4.6.0)
## xlsx 0.6.5 2020-11-10 [2] CRAN (R 4.6.0)
## xlsxjars 0.9.0 2025-07-02 [2] CRAN (R 4.6.0)
## xmapbridge 1.69.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## XML 3.99-0.20 2025-11-08 [2] CRAN (R 4.6.0)
## xml2 1.5.1 2025-12-01 [2] CRAN (R 4.6.0)
## xmlparsedata 1.0.5 2021-03-06 [2] CRAN (R 4.6.0)
## xopen 1.0.1 2024-04-25 [2] CRAN (R 4.6.0)
## xtable 1.8-4 2019-04-21 [2] CRAN (R 4.6.0)
## XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 0.99.12 2025-11-17 [2] Bioconductor
## XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 0.99.12 2025-11-17 [2] Bioconductor
## xts 0.14.1 2024-10-15 [2] CRAN (R 4.6.0)
## XVector 0.51.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## yaImpute 1.0-34.1 2024-09-21 [2] CRAN (R 4.6.0)
## yaml 2.3.12 2025-12-10 [2] CRAN (R 4.6.0)
## yamss 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## YAPSA 1.37.1 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## yardstick 1.3.2 2025-01-22 [2] CRAN (R 4.6.0)
## yarn 1.37.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## yeast2.db 3.13.0 2025-11-17 [2] Bioconductor
## yeastCC 1.51.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## yeastExpData 0.57.0 2025-11-04 [2] Bioconductor 3.23 (R 4.6.0)
## yeastNagalakshmi 1.47.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## yeastRNASeq 0.49.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## yesno 0.1.3 2024-07-26 [2] CRAN (R 4.6.0)
## yulab.utils 0.2.2 2025-12-01 [2] CRAN (R 4.6.0)
## zCompositions 1.5.0-5 2025-06-30 [2] CRAN (R 4.6.0)
## zeallot 0.2.0 2025-05-27 [2] CRAN (R 4.6.0)
## zebrafishRNASeq 1.31.0 2025-10-30 [2] Bioconductor 3.23 (R 4.6.0)
## zellkonverter 1.21.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## zenith 1.13.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## zFPKM 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## zigg 0.0.2 2025-02-07 [2] CRAN (R 4.6.0)
## zinbwave 1.33.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## zip 2.3.3 2025-05-13 [2] CRAN (R 4.6.0)
## zitools 1.5.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
## zoo 1.8-14 2025-04-10 [2] CRAN (R 4.6.0)
## ZygosityPredictor 1.11.0 2025-12-10 [2] Bioconductor 3.23 (R 4.6.0)
##
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## [2] /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library
##
## * ββ Packages attached to the search path.
## P ββ Loaded and on-disk path mismatch.
##
## β Python configuration ββββββββββββββββββββββββββββββββββββββββββββββββββββ
## Python is not available
##
## βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ