Package: vulcan
Type: Package
Title: VirtUaL ChIP-Seq data Analysis using Networks
Version: 1.33.0
Author: Federico M. Giorgi, Andrew N. Holding, Florian Markowetz
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>
Description: Vulcan (VirtUaL ChIP-Seq Analysis through Networks) is a package
    that interrogates gene regulatory networks to infer cofactors
    significantly enriched in a differential binding signature coming from
    ChIP-Seq data.
    In order to do so, our package combines strategies from different
    BioConductor packages: DESeq for data normalization, ChIPpeakAnno and
    DiffBind for annotation and definition of ChIP-Seq genomic peaks,
    csaw to define optimal peak width and viper for applying a regulatory
    network over a differential binding signature.
License: LGPL-3
LazyData: TRUE
biocViews: SystemsBiology, NetworkEnrichment, GeneExpression, ChIPSeq
NeedsCompilation: no
Suggests: vulcandata
Depends: R (>= 4.0), ChIPpeakAnno,TxDb.Hsapiens.UCSC.hg19.knownGene, zoo,
    GenomicRanges, S4Vectors, viper, DiffBind, locfit
Imports: wordcloud, csaw, gplots, stats, utils,
    caTools, graphics, DESeq2, Biobase
Encoding: UTF-8
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/vulcan
git_branch: devel
git_last_commit: 2216885
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
