Package: tweeDEseq
Type: Package
Title: RNA-seq data analysis using the Poisson-Tweedie family of
        distributions
Authors@R:
    c(person("Dolors", "Pelegri-Siso", ,"dolors.pelegri@isglobal.org",
    role = c("aut", "cre"),comment = c(ORCID = "0000-0002-5993-3003")),
      person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org",
      role = "aut", comment = c(ORCID = "0000-0003-3267-2146")),
      person("Mikel", "Esnaola", ,"mesnaola@creal.cat", role = "aut"),
      person("Robert", "Castelo", ,"robert.castelo@upf.edu", role = "aut"))
Description: Differential expression analysis of RNA-seq using the
        Poisson-Tweedie (PT) family of distributions. PT distributions are described
        by a mean, a dispersion and a shape parameter and include Poisson and NB
        distributions, among others, as particular cases. An important feature of this
        family is that, while the Negative Binomial (NB) distribution only allows a
        quadratic mean-variance relationship, the PT distributions generalizes this
        relationship to any orde.
Version: 1.57.0
Date: 2023-07-05
Depends: R (>= 4.3.0)
Imports: Rcpp (>= 1.0.10),
         MASS,
         limma,
         edgeR,
         parallel,
         cqn,
         grDevices,
         graphics,
         stats,
         utils
Suggests: tweeDEseqCountData, xtable
LinkingTo: Rcpp
Encoding: UTF-8
License: GPL (>= 2)
LazyLoad: yes
URL: https://github.com/isglobal-brge/tweeDEseq/
BugReports: https://github.com/isglobal-brge/tweeDEseq/issues
biocViews: ImmunoOncology, StatisticalMethod, DifferentialExpression,
        Sequencing, RNASeq, DNASeq
git_url: https://git.bioconductor.org/packages/tweeDEseq
git_branch: devel
git_last_commit: d453ad1
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
