Type: Package
Package: tidySummarizedExperiment
Title: Brings SummarizedExperiment to the Tidyverse 
Version: 1.21.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")) )
Author: Stefano Mangiola [aut, cre] <mangiolastefano@gmail.com>
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Description: The tidySummarizedExperiment package provides a set of tools for creating and
  manipulating tidy data representations of SummarizedExperiment objects. SummarizedExperiment
  is a widely used data structure in bioinformatics for storing high-throughput genomic data, 
  such as gene expression or DNA sequencing data. 
  The tidySummarizedExperiment package introduces a tidy framework for working with SummarizedExperiment objects. 
  It allows users to convert their data into a tidy format, where each observation is a row 
  and each variable is a column. This tidy representation simplifies data manipulation, 
  integration with other tidyverse packages, and enables seamless integration with the broader 
  ecosystem of tidy tools for data analysis.
License: GPL-3
Depends:
    R (>= 4.3.0),
    SummarizedExperiment,
    ttservice (>= 0.5.0)
Imports:
	dplyr,
    tibble (>= 3.0.4),
    magrittr,
    tidyr,
    ggplot2,
    rlang,
    purrr,
    lifecycle,
    methods,
    utils,
    S4Vectors,
    tidyselect,
    ellipsis,
    vctrs,
    pillar,
    stringr,
    cli,
    fansi,
    stats,
    pkgconfig,
    plyxp
Suggests:
    BiocStyle,
    testthat,
    knitr,
    markdown,
    rmarkdown,
    plotly,
    rbibutils,
    prettydoc,
    airway
VignetteBuilder: 
    knitr
RdMacros:
    lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression, GeneExpression, Normalization, Clustering, QualityControl, Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidySummarizedExperiment
BugReports: https://github.com/stemangiola/tidySummarizedExperiment/issues
git_url: https://git.bioconductor.org/packages/tidySummarizedExperiment
git_branch: devel
git_last_commit: d35c29a
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
