Package: spatialFDA
Title: A Tool for Spatial Multi-sample Comparisons
Version: 1.3.1
Authors@R: c(
    person("Martin", "Emons", , "martin.emons@uzh.ch", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0000-5219-5311")),
    person("Samuel", "Gunz", ,role="aut",
           comment = c(ORCID = "0000-0002-8909-0932")),
    person("Fabian", "Scheipl", , role="aut",
            comment = c(ORCID = "0000-0001-8172-3603")),
    person("Mark D.", "Robinson", , "mark.robinson@mls.uzh.ch", role = c("aut", "fnd"),
           comment = c(ORCID = "0000-0002-3048-5518")))
URL: https://github.com/mjemons/spatialFDA
BugReports: https://github.com/mjemons/spatialFDA/issues
Description: spatialFDA is a package to calculate spatial statistics metrics. 
            The package takes a SpatialExperiment object and calculates spatial statistics metrics using the package spatstat.
            Then it compares the resulting functions across samples/conditions using functional additive models as implemented in the package refund. 
            Furthermore, it provides exploratory visualisations using functional principal component analysis, as well implemented in refund.
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.3.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: 
    dplyr,
    ggplot2,
    parallel,
    patchwork,
    purrr,
    refund,
    SpatialExperiment,
    spatstat.explore,
    spatstat.geom,
    SummarizedExperiment,
    methods,
    stats,
    fda,
    tidyr,
    graphics,
    ExperimentHub,
    scales,
    S4Vectors
biocViews: Software, Spatial, Transcriptomics
VignetteBuilder: knitr
Suggests: 
    stringr,
    knitr,
    rmarkdown,
    BiocStyle,
    testthat (>= 3.0.0),
    mgcv
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/spatialFDA
git_branch: devel
git_last_commit: bd8c241
git_last_commit_date: 2025-11-03
Repository: Bioconductor 3.23
