Package: sosta
Title: A package for the analysis of anatomical tissue structures in spatial omics data
Version: 1.3.0
Authors@R: c(
    person("Samuel", "Gunz", , "samuel.gunz@uzh.ch", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8909-0932")),
    person("Mark D.", "Robinson", role=c("aut", "fnd"), 
	    email="mark.robinson@mls.uzh.ch"))
Description: sosta (Spatial Omics STructure Analysis) is a package for analyzing
    spatial omics data to explore tissue organization at the anatomical structure level.
    It reconstructs anatomically relevant structures based on molecular features 
    or cell types. It further calculates a range of metrics at the structure level
    to quantitatively describe tissue architecture. The package is designed to integrate 
    with other packages for the analysis of spatial omics data.
License: GPL (>= 3) + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.4.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://github.com/sgunz/sosta, https://sgunz.github.io/sosta/
BugReports: https://github.com/sgunz/sosta/issues
biocViews: Software, Spatial, Transcriptomics, Visualization
Imports: 
    terra,
    sf,
    smoothr,
    spatstat.explore,
    spatstat.geom,
    SpatialExperiment,
    SingleCellExperiment,
    dplyr,
    ggplot2,
    patchwork,
    SummarizedExperiment,
    stats,
    rlang,
    parallel,
    EBImage,
    spatstat.random,
    S4Vectors
Suggests:
    knitr,
    rmarkdown,
    BiocStyle,
    ExperimentHub,
    lme4,
    lmerTest,
    ggfortify,
    tidyr,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
LazyData: true
git_url: https://git.bioconductor.org/packages/sosta
git_branch: devel
git_last_commit: 02b3ce2
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
