MAST Identify adaptive thresholds

Source: R/plotDEAnalysis.R

MAST Identify adaptive thresholds

thresholdGenes(inSCE, useAssay = "logcounts")

Arguments

inSCE

SingleCellExperiment object
useAssay

character, default "logcounts"

Value

list of thresholded counts (on natural scale), thresholds, bins, densities estimated on each bin, and the original data from thresholdSCRNACountMatrix

Examples

data("mouseBrainSubsetSCE")
res <- thresholdGenes(mouseBrainSubsetSCE)
#> `fData` has no primerid.  I'll make something up.
#> `cData` has no wellKey.  I'll make something up.
#> Assuming data assay in position 1, with name et is log-transformed.