count_word.RdCalculate word frequency
count_word(term, exclude_words = NULL)
| term | A vector of description texts. |
|---|---|
| exclude_words | The words that should be excluded. |
The text preprocessing followings the instructions from http://www.sthda.com/english/wiki/word-cloud-generator-in-r-one-killer-function-to-do-everything-you-need .
A data frame with words and frequencies.
gm = readRDS(system.file("extdata", "random_GO_BP_sim_mat.rds", package = "simplifyEnrichment")) go_id = rownames(gm) go_term = AnnotationDbi::select(GO.db::GO.db, keys = go_id, columns = "TERM")$TERM#>count_word(go_term)#> word freq #> regulation regulation 184 #> cell cell 61 #> negative negative 61 #> positive positive 60 #> process process 59 #> signaling signaling 45 #> response response 44 #> pathway pathway 40 #> protein protein 27 #> involved involved 27 #> development development 21 #> metabolic metabolic 21 #> cellular cellular 20 #> differentiation differentiation 19 #> transport transport 19 #> proliferation proliferation 18 #> receptor receptor 18 #> assembly assembly 17 #> catabolic catabolic 17 #> activity activity 17 #> biosynthetic biosynthetic 15 #> morphogenesis morphogenesis 15 #> factor factor 12 #> dna dna 12 #> processing processing 12 #> secretion secretion 11 #> migration migration 11 #> organization organization 11 #> membrane membrane 10 #> muscle muscle 10 #> activation activation 10 #> growth growth 10 #> apoptotic apoptotic 10 #> via via 10 #> formation formation 9 #> adhesion adhesion 9 #> complex complex 8 #> ion ion 8 #> heart heart 8 #> production production 8 #> acid acid 8 #> smooth smooth 7 #> rna rna 7 #> endothelial endothelial 7 #> blood blood 7 #> calcium calcium 6 #> mitochondrial mitochondrial 6 #> transmembrane transmembrane 6 #> immune immune 6 #> stimulus stimulus 6 #> homeostasis homeostasis 6 #> mesenchymal mesenchymal 6 #> neuron neuron 5 #> plasma plasma 5 #> transcription transcription 5 #> dopamine dopamine 5 #> localization localization 5 #> meiotic meiotic 5 #> epithelial epithelial 5 #> stem stem 5 #> mitotic mitotic 5 #> determination determination 5 #> modification modification 5 #> phosphorylation phosphorylation 4 #> export export 4 #> vessel vessel 4 #> rrna rrna 4 #> vascular vascular 4 #> specification specification 4 #> nodal nodal 4 #> mediated mediated 4 #> cellcell cellcell 4 #> stress stress 4 #> histone histone 4 #> methylation methylation 4 #> signal signal 4 #> cycle cycle 4 #> maintenance maintenance 4 #> glycine glycine 4 #> amyloid amyloid 4 #> valve valve 4 #> snrna snrna 4 #> across across 3 #> contraction contraction 3 #> intestinal intestinal 3 #> junction junction 3 #> class class 3 #> polymerase polymerase 3 #> repair repair 3 #> death death 3 #> domain domain 3 #> interleukin interleukin 3 #> hormone hormone 3 #> peptidyllysine peptidyllysine 3 #> intracellular intracellular 3 #> metanephric metanephric 3 #> tubule tubule 3 #> proteincoupled proteincoupled 3 #> amino amino 3 #> cardiac cardiac 3 #> inhibitory inhibitory 3 #> kinase kinase 3 #> replication replication 3 #> break break 3 #> doublestrand doublestrand 3 #> monocyte monocyte 3 #> structure structure 3 #> gland gland 3 #> bud bud 3 #> precursor precursor 3 #> cascade cascade 3 #> lipoprotein lipoprotein 3 #> synaptic synaptic 3 #> eye eye 3 #> oligomerization oligomerization 3 #> nucleus nucleus 3 #> olfactory olfactory 3 #> transsynaptic transsynaptic 3 #> maturation maturation 3 #> system system 3 #> sterol sterol 3 #> pancreatic pancreatic 3 #> lipid lipid 3 #> fate fate 3 #> inflammatory inflammatory 3 #> damage damage 3 #> end end 3 #> postsynaptic postsynaptic 3 #> checkpoint checkpoint 3 #> mirna mirna 3 #> dsrna dsrna 3 #> septum septum 2 #> lateral lateral 2 #> neural neural 2 #> antiporter antiporter 2 #> calciumsodium calciumsodium 2 #> mucus mucus 2 #> abscission abscission 2 #> beta beta 2 #> transforming transforming 2 #> levels levels 2 #> oxygen oxygen 2 #> small small 2 #> lornithine lornithine 2 #> lymph lymph 2 #> meiosis meiosis 2 #> disassembly disassembly 2 #> kappab kappab 2 #> kinasenfkappab kinasenfkappab 2 #> chain chain 2 #> endosome endosome 2 #> cortex cortex 2 #> acetylcholine acetylcholine 2 #> steroid steroid 2 #> generation generation 2 #> axis axis 2 #> phosphate phosphate 2 #> host host 2 #> barrier barrier 2 #> tissue tissue 2 #> depolarization depolarization 2 #> leukotriene leukotriene 2 #> nerve nerve 2 #> distal distal 2 #> integration integration 2 #> endoplasmic endoplasmic 2 #> reticulum reticulum 2 #> fiber fiber 2 #> collagen collagen 2 #> monophosphate monophosphate 2 #> circulation circulation 2 #> remodeling remodeling 2 #> peptide peptide 2 #> glial glial 2 #> transduction transduction 2 #> microtubule microtubule 2 #> ubiquitindependent ubiquitindependent 2 #> synapse synapse 2 #> leukocyte leukocyte 2 #> mesoderm mesoderm 2 #> mitochondrion mitochondrion 2 #> prostaglandin prostaglandin 2 #> bmp bmp 2 #> duct duct 2 #> lowdensity lowdensity 2 #> particle particle 2 #> vesicle vesicle 2 #> acidification acidification 2 #> dopaminergic dopaminergic 2 #> wnt wnt 2 #> mature mature 2 #> bulb bulb 2 #> interneuron interneuron 2 #> transmission transmission 2 #> cleavage cleavage 2 #> promoter promoter 2 #> dichotomous dichotomous 2 #> mammary mammary 2 #> subdivision subdivision 2 #> terminal terminal 2 #> units units 2 #> type type 2 #> lung lung 2 #> acetylation acetylation 2 #> cytokinesis cytokinesis 2 #> ciliary ciliary 2 #> transition transition 2 #> zone zone 2 #> adenylate adenylate 2 #> intrinsic intrinsic 2 #> mediator mediator 2 #> phosphatidylserine phosphatidylserine 2 #> containing containing 2 #> nucleotidebinding nucleotidebinding 2 #> granule granule 2 #> pigment pigment 2 #> endocytosis endocytosis 2 #> primary primary 2 #> chemotaxis chemotaxis 2 #> lymphocyte lymphocyte 2 #> electron electron 2 #> axon axon 2 #> phospholipase phospholipase 2 #> import import 2 #> testosterone testosterone 2 #> nephron nephron 2 #> glycosylation glycosylation 2 #> stellate stellate 2 #> polyamine polyamine 2 #> thymocyte thymocyte 2 #> cysteinetype cysteinetype 2 #> endopeptidase endopeptidase 2 #> termination termination 2 #> cord cord 2 #> spinal spinal 2 #> anterior anterior 2 #> cholesterol cholesterol 2 #> nterminal nterminal 2 #> antigen antigen 2 #> binding binding 2 #> branching branching 2 #> atrial atrial 1 #> eminence eminence 1 #> ganglionic ganglionic 1 #> lamellipodium lamellipodium 1 #> cdp cdp 1 #> niknfkappab niknfkappab 1 #> timing timing 1 #> synaptonemal synaptonemal 1 #> lcysteine lcysteine 1 #> mediolateral mediolateral 1 #> plate plate 1 #> regionalization regionalization 1 #> nad nad 1 #> dadp dadp 1 #> behavioral behavioral 1 #> pain pain 1 #> midbody midbody 1 #> transit transit 1 #> intestine intestine 1 #> glycerophospholipid glycerophospholipid 1 #> iii iii 1 #> cardioblast cardioblast 1 #> field field 1 #> midline midline 1 #> activin activin 1 #> incision incision 1 #> lesion lesion 1 #> nucleotideexcision nucleotideexcision 1 #> histidine histidine 1 #> neuromuscular neuromuscular 1 #> cpg cpg 1 #> hypomethylation hypomethylation 1 #> island island 1 #> somatostatin somatostatin 1 #> expression expression 1 #> gene gene 1 #> posttranscriptional posttranscriptional 1 #> responseregulating responseregulating 1 #> extrinsic extrinsic 1 #> receptors receptors 1 #> proteincontaining proteincontaining 1 #> apoptosis apoptosis 1 #> execution execution 1 #> phase phase 1 #> respiratory respiratory 1 #> clathrin clathrin 1 #> coat coat 1 #> atp atp 1 #> protontransporting protontransporting 1 #> synthase synthase 1 #> elongation elongation 1 #> spindle spindle 1 #> fumarate fumarate 1 #> biotic biotic 1 #> detection detection 1 #> cilium cilium 1 #> cyclase cyclase 1 #> guanylate guanylate 1 #> cytokinemediated cytokinemediated 1 #> thyroglobulin thyroglobulin 1 #> triiodothyronine triiodothyronine 1 #> thyroid thyroid 1 #> base base 1 #> conversion conversion 1 #> editing editing 1 #> substitution substitution 1 #> associated associated 1 #> fucose fucose 1 #> dorsalventral dorsalventral 1 #> hepatocyte hepatocyte 1 #> glucose glucose 1 #> palatal palatal 1 #> shelf shelf 1 #> axodendritic axodendritic 1 #> cytoplasm cytoplasm 1 #> peptides peptides 1 #> proteins proteins 1 #> translocation translocation 1 #> hydroxylation hydroxylation 1 #> peptidylhistidine peptidylhistidine 1 #> crotonylation crotonylation 1 #> establishment establishment 1 #> gamma gamma 1 #> radiation radiation 1 #> lymphoid lymphoid 1 #> nasopharyngealassociated nasopharyngealassociated 1 #> shelterin shelterin 1 #> trochlear trochlear 1 #> conjugation conjugation 1 #> isgprotein isgprotein 1 #> immunoglobulin immunoglobulin 1 #> adenosine adenosine 1 #> propylene propylene 1 #> molecules molecules 1 #> plasmamembrane plasmamembrane 1 #> transposon transposon 1 #> monocarboxylic monocarboxylic 1 #> dserine dserine 1 #> sumo sumo 1 #> transferase transferase 1 #> aerobic aerobic 1 #> respiration respiration 1 #> amyloidbeta amyloidbeta 1 #> biosynthesis biosynthesis 1 #> glutaminyltrnagln glutaminyltrnagln 1 #> transamidation transamidation 1 #> cap cap 1 #> hypermethylation hypermethylation 1 #> methylguanosine methylguanosine 1 #> interferongamma interferongamma 1 #> division division 1 #> somatic somatic 1 #> basic basic 1 #> senescence senescence 1 #> network network 1 #> tubular tubular 1 #> fibril fibril 1 #> potential potential 1 #> extracellular extracellular 1 #> necrosis necrosis 1 #> tumor tumor 1 #> dolichyl dolichyl 1 #> klinked klinked 1 #> ubiquitination ubiquitination 1 #> leukemia leukemia 1 #> acrosome acrosome 1 #> janus janus 1 #> isotype isotype 1 #> switching switching 1 #> glycoprotein glycoprotein 1 #> aluminum aluminum 1 #> derived derived 1 #> neurotrophic neurotrophic 1 #> ras ras 1 #> necrotic necrotic 1 #> androgen androgen 1 #> benzylpenicillin benzylpenicillin 1 #> fork fork 1 #> recombinationdependent recombinationdependent 1 #> reciprocal reciprocal 1 #> recombination recombination 1 #> myeloid myeloid 1 #> depolymerization depolymerization 1 #> lipoxygenase lipoxygenase 1 #> peptidylarginine peptidylarginine 1 #> bronchiole bronchiole 1 #> proteasomemediated proteasomemediated 1 #> bile bile 1 #> glyoxylate glyoxylate 1 #> transamination transamination 1 #> prostate prostate 1 #> segment segment 1 #> interference interference 1 #> sirna sirna 1 #> fas fas 1 #> prostatic prostatic 1 #> neurotransmission neurotransmission 1 #> oligosaccharide oligosaccharide 1 #> symbiont symbiont 1 #> autophagy autophagy 1 #> circadian circadian 1 #> rem rem 1 #> sleep sleep 1 #> sleepwake sleepwake 1 #> follicle follicle 1 #> hair hair 1 #> trabecula trabecula 1 #> ureter ureter 1 #> perception perception 1 #> sensory sensory 1 #> temperature temperature 1 #> locomotion locomotion 1 #> odontogenesis odontogenesis 1 #> nitrosative nitrosative 1 #> hexose hexose 1 #> stressactivated stressactivated 1 #> inteinmediated inteinmediated 1 #> splicing splicing 1 #> paramesonephric paramesonephric 1 #> renin renin 1 #> stream stream 1 #> clearance clearance 1 #> exocytosis exocytosis 1 #> magnesium magnesium 1 #> vacuolar vacuolar 1 #> stat stat 1 #> neutrophil neutrophil 1 #> midbrain midbrain 1 #> glutamate glutamate 1 #> oxoglutarate oxoglutarate 1 #> glutathione glutathione 1 #> urea urea 1 #> palate palate 1 #> secondary secondary 1 #> ribosomal ribosomal 1 #> subunit subunit 1 #> one one 1 #> stage stage 1 #> transitional transitional 1 #> fibroblast fibroblast 1 #> pseudouridine pseudouridine 1 #> synthesis synthesis 1 #> epidermal epidermal 1 #> endocannabinoid endocannabinoid 1 #> modulating modulating 1 #> autophagosome autophagosome 1 #> alcohol alcohol 1 #> nuclear nuclear 1 #> decarboxylation decarboxylation 1 #> ameloblast ameloblast 1 #> family family 1 #> serine serine 1 #> arseniccontaining arseniccontaining 1 #> substance substance 1 #> chemokine chemokine 1 #> thapsigargin thapsigargin 1 #> lipase lipase 1 #> rnamediated rnamediated 1 #> transposition transposition 1 #> location location 1 #> drug drug 1 #> distribution distribution 1 #> proteasomal proteasomal 1 #> skeletal skeletal 1 #> induction induction 1 #> gastrulation gastrulation 1 #> fusion fusion 1 #> myoblast myoblast 1 #> tolllike tolllike 1 #> targeting targeting 1 #> desensitization desensitization 1 #> proteolysis proteolysis 1 #> ureteric ureteric 1 #> cold cold 1 #> estrogen estrogen 1 #> camptothecin camptothecin 1 #> endodermal endodermal 1 #> healing healing 1 #> wound wound 1 #> adrenergic adrenergic 1 #> cyclaseinhibiting cyclaseinhibiting 1 #> exposure exposure 1 #> surface surface 1 #> uptake uptake 1 #> anatomical anatomical 1 #> joining joining 1 #> nonhomologous nonhomologous 1 #> guaninenmethylation guaninenmethylation 1 #> peptidylmethionine peptidylmethionine 1 #> innate innate 1 #> lysosome lysosome 1 #> neuropilin neuropilin 1 #> toll toll 1 #> raft raft 1 #> alkaloid alkaloid 1 #> cobalamin cobalamin 1 #> concentration concentration 1 #> cytosolic cytosolic 1 #> trimethylation trimethylation 1 #> sadenosylhomocysteine sadenosylhomocysteine 1 #> learning learning 1 #> transporter transporter 1 #> carbohydrate carbohydrate 1 #> derivative derivative 1 #> exoribonuclease exoribonuclease 1 #> nucleobase nucleobase 1 #> purine purine 1 #> body body 1 #> divisions divisions 1 #> extrusion extrusion 1 #> polar polar 1 #> fructoselysine fructoselysine 1 #> high high 1 #> venule venule 1 #> molecular molecular 1 #> acylchain acylchain 1 #> myofibril myofibril 1 #> cytoskeleton cytoskeleton 1 #> translation translation 1 #> viral viral 1 #> subventricular subventricular 1 #> tangential tangential 1 #> intras intras 1 #> angiogenesis angiogenesis 1 #> sprouting sprouting 1 #> extension extension 1 #> guidance guidance 1 #> gamete gamete 1 #> male male 1 #> dactivating dactivating 1 #> immature immature 1 #> thymus thymus 1 #> fattyacylcoa fattyacylcoa 1 #> longchain longchain 1 #> tube tube 1 #> molecule molecule 1 #> inactivity inactivity 1 #> fructose fructose 1 #> keratinocyte keratinocyte 1 #> hypotonic hypotonic 1 #> acetylcoa acetylcoa 1 #> llysine llysine 1 #> saccharopine saccharopine 1 #> fungiform fungiform 1 #> papilla papilla 1 #> renal renal 1 #> eifalpha eifalpha 1 #> gonadotropin gonadotropin 1 #> lumen lumen 1 #> lysosomal lysosomal 1 #> golgi golgi 1 #> peptidase peptidase 1 #> serinetype serinetype 1 #> dendritic dendritic 1 #> plasmacytoid plasmacytoid 1 #> rolling rolling 1 #> tethering tethering 1 #> female female 1 #> pressure pressure 1 #> embryonic embryonic 1 #> hemopoiesis hemopoiesis 1 #> heparin heparin 1 #> mast mast 1 #> nlinked nlinked 1 #> iremediated iremediated 1 #> unfolded unfolded 1 #> threonine threonine 1 #> rts rts 1 #> sitespecific sitespecific 1 #> proteasome proteasome 1 #> asymmetry asymmetry 1 #> leftright leftright 1 #> urothelial urothelial 1 #> metanephros metanephros 1 #> central central 1 #> myelin myelin 1 #> nervous nervous 1 #> actin actin 1 #> barbedend barbedend 1 #> capping capping 1 #> filament filament 1 #> camkkampk camkkampk 1 #> ventral ventral 1 #> kidney kidney 1 #> cyclaseactivating cyclaseactivating 1 #> head head 1 #> lipidation lipidation 1 #> digestion digestion 1 #> tunicamycin tunicamycin 1 #> dorsal dorsal 1 #> identity identity 1 #> motor motor 1 #> mitral mitral 1 #> channel channel 1 #> voltagegated voltagegated 1 #> islet islet 1 #> polypeptide polypeptide 1 #> lactam lactam 1 #> schwann schwann 1 #> hepatic hepatic 1 #> udpglucuronic udpglucuronic 1 #> ribonucleoside ribonucleoside 1 #> peptidylhypusine peptidylhypusine 1 #> iris iris 1 #> fidelity fidelity 1 #> translational translational 1 #> monomethylation monomethylation 1 #> glyoxal glyoxal 1 #> mineralization mineralization 1 #> tooth tooth 1 #> acutephase acutephase 1 #> compartment compartment 1 #> pattern pattern 1 #> chaperonemediated chaperonemediated 1 #> hydrogen hydrogen 1 #> peroxideinduced peroxideinduced 1 #> adherens adherens 1 #> insulinlike insulinlike 1 #> glucocorticoid glucocorticoid 1 #> fcgamma fcgamma 1 #> ribose ribose 1 #> compound compound 1 #> nucleobasecontaining nucleobasecontaining 1 #> endothelin endothelin 1 #> coagulation coagulation 1 #> catalytic catalytic 1 #> core core 1 #> telomerase telomerase 1 #> mrna mrna 1 #> nucleartranscribed nucleartranscribed 1 #> ruffle ruffle 1 #> killer killer 1 #> natural natural 1 #> chemical chemical 1 #> communication communication 1 #> coupling coupling 1 #> somite somite 1 #> methylcytosine methylcytosine 1 #> anteriorposterior anteriorposterior 1 #> embryo embryo 1 #> zygotic zygotic 1 #> vacuole vacuole 1 #> alpha alpha 1 #> eif eif 1 #> biomineral biomineral 1 #> rate rate 1 #> deacetylation deacetylation 1 #> exogenous exogenous 1 #> mhc mhc 1 #> presentation presentation 1 #> polysome polysome 1 #> oocyte oocyte 1 #> secundum secundum 1 #> hindbrain hindbrain 1 #> sequestering sequestering 1 #> heterochromatin heterochromatin 1 #> developmental developmental 1 #> cellmatrix cellmatrix 1 #> ligase ligase 1 #> chorionic chorionic 1 #> trophoblast trophoblast 1 #> iron iron 1 #> cotranslational cotranslational 1 #> neurofibrillary neurofibrillary 1 #> tangle tangle 1 #> tip tip 1 #> integrin integrin 1 #> increased increased 1 #> polysaccharide polysaccharide 1 #> immunity immunity 1 #> aminoacylation aminoacylation 1 #> aspartyltrna aspartyltrna 1 #> nutrient nutrient 1 #> semilunar semilunar 1 #> juice juice 1 #> thelper thelper 1 #> tricarboxylic tricarboxylic 1 #> cytokine cytokine 1 #> sperm sperm 1 #> transfer transfer 1 #> kinetochore kinetochore 1 #> macrophage macrophage 1 #> arachidonic arachidonic 1 #> internalization internalization 1 #> neurotransmitter neurotransmitter 1 #> dnadependent dnadependent 1 #> initiation initiation 1 #> cerebral cerebral 1 #> oriented oriented 1 #> radially radially 1 #> myristoylation myristoylation 1 #> polyglycylation polyglycylation 1 #> orthogonal orthogonal 1 #> vitamin vitamin 1 #> visual visual 1 #> coronary coronary 1 #> vasculogenesis vasculogenesis 1