Package: scuttle
Type: Package
Authors@R: c(
        person("Aaron", "Lun", role = c("aut", "cre"), email="infinite.monkeys.with.keyboards@gmail.com"),
        person("Davis", "McCarthy", role="aut")
    )
Version: 1.21.0
Date: 2024-10-26
License: GPL-3
Title: Single-Cell RNA-Seq Analysis Utilities
Description: 
    Provides basic utility functions for performing single-cell analyses,
    focusing on simple normalization, quality control and data transformations.
    Also provides some helper functions to assist development of other packages.
Depends: 
    SingleCellExperiment
Imports: 
    methods, 
    utils, 
    stats, 
    Matrix, 
    Rcpp, 
    BiocGenerics, 
    S4Vectors, 
    BiocParallel,
    GenomicRanges,
    SummarizedExperiment,
    S4Arrays,
    MatrixGenerics,
    SparseArray,
    DelayedArray,
    beachmat
Suggests: 
    BiocStyle, 
    knitr,
    scRNAseq,
    rmarkdown,
    testthat,
    sparseMatrixStats,
    DelayedMatrixStats,
    scran
VignetteBuilder: knitr
biocViews: 
    ImmunoOncology, 
    SingleCell, 
    RNASeq, 
    QualityControl, 
    Preprocessing, 
    Normalization,
    Transcriptomics, 
    GeneExpression, 
    Sequencing, 
    Software, 
    DataImport
LinkingTo: Rcpp, beachmat
SystemRequirements: C++11
RoxygenNote: 7.3.2
Encoding: UTF-8
NeedsCompilation: yes
git_url: https://git.bioconductor.org/packages/scuttle
git_branch: devel
git_last_commit: 02c9bb0
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
