scShapes

The goal of scShapes is to model and compare distribution shape profiles of scRNA-sequencing data.

Installation

You can install the released version of scShapes from CRAN with:

install.packages("scShapes")

Example

This is a basic example which shows you how to solve a common problem:

library(scShapes)
#> Warning: replacing previous import 'dplyr::filter' by 'stats::filter' when
#> loading 'scShapes'
#> Warning: replacing previous import 'dplyr::lag' by 'stats::lag' when loading
#> 'scShapes'
#> Warning: replacing previous import 'stats::ks.test' by 'dgof::ks.test' when
#> loading 'scShapes'
## basic example code

What is special about using README.Rmd instead of just README.md? You can include R chunks like so:

summary(cars)
#>      speed           dist       
#>  Min.   : 4.0   Min.   :  2.00  
#>  1st Qu.:12.0   1st Qu.: 26.00  
#>  Median :15.0   Median : 36.00  
#>  Mean   :15.4   Mean   : 42.98  
#>  3rd Qu.:19.0   3rd Qu.: 56.00  
#>  Max.   :25.0   Max.   :120.00

You’ll still need to render README.Rmd regularly, to keep README.md up-to-date. devtools::build_readme() is handy for this. You could also use GitHub Actions to re-render README.Rmd every time you push. An example workflow can be found here: https://github.com/r-lib/actions/tree/master/examples.

You can also embed plots, for example:

In that case, don’t forget to commit and push the resulting figure files, so they display on GitHub and CRAN.