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MOB_subset
|
MOB_subset spatial example data |
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liver
|
Liver trajectory example data |
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`params<-`()
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Setter functions for scHOT objects |
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plotColouredExpression()
|
plotColouredExpression |
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plotEgoNetwork()
|
plotEgoNetwork |
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plotHigherOrderSequence()
|
plotHigherOrderSequence |
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plotOrderedExpression()
|
plotOrderedExpression |
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`positionColData<-`()
|
Setter functions for scHOT objects |
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`positionType<-`()
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Setter functions for scHOT objects |
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scHOT-class
|
scHOT class |
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scHOT()
|
scHOT |
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scHOT_addTestingScaffold()
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scHOT_addTestingScaffold |
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scHOT_buildFromMatrix()
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scHOT_buildFromMatrix |
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scHOT_buildFromSCE()
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scHOT_buildFromSCE |
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scHOT_calculateGlobalHigherOrderFunction()
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scHOT_calculateGlobalHigherOrderFunction |
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scHOT_calculateHigherOrderTestStatistics()
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scHOT_calculateHigherOrderTestStatistics |
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scHOT_estimatePvalues()
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scHOT_estimatePvalues |
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`scHOT_output<-`()
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Setter functions for scHOT objects |
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scHOT_performPermutationTest()
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scHOT_performPermutationTest |
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scHOT_plotPermutationDistributions()
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scHOT_plotPermutationDistributions |
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scHOT_setPermutationScaffold()
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scHOT_setPermutationScaffold |
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scHOT_setWeightMatrix()
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scHOT_setWeightMatrix |
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scHOT_stripOutput()
|
scHOT_stripOutput |
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spatialWeightMatrix()
|
spatialWeightMatrix |
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`testingScaffold<-`()
|
Setter functions for scHOT objects |
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thin()
|
thin |
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trajectoryWeightMatrix()
|
trajectoryWeightMatrix |
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`weightMatrix<-`()
|
Setter functions for scHOT objects |
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weightedPearson()
|
weightedPearson |
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weightedSpearman()
|
weightedSpearman |
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weightedVariance()
|
weightedVariance |
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weightedZIKendall()
|
weightedZIKendall |
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weightedZISpearman()
|
weightedZISpearman |