Type: Package
Package: rprimer
Title: Design Degenerate Oligos from a Multiple DNA Sequence Alignment
Version: 1.15.0
Description: 
    Functions, workflow, and a Shiny application for visualizing sequence 
    conservation and designing degenerate primers, probes, and (RT)-(q/d)PCR 
    assays from a multiple DNA sequence alignment. The results can be presented 
    in data frame format and visualized as dashboard-like plots. For more information, 
    please see the package vignette.
Authors@R: 
    person(given = "Sofia",
           family = "Persson",
           role = c("aut", "cre"),
           email = "sofiapersson27@gmail.com",
           comment = c(ORCID = "0000-0003-2611-3030"))
License: GPL-3
URL: https://github.com/sofpn/rprimer
BugReports: https://github.com/sofpn/rprimer/issues
Depends: 
    R (>= 4.1)
Imports:
    Biostrings,
    bslib,
    DT,
    ggplot2,
    IRanges,
    mathjaxr,
    methods,
    patchwork,
    reshape2,
    S4Vectors,
    shiny,
    shinycssloaders,
    shinyFeedback
Suggests: 
    BiocStyle,
    covr,
    kableExtra,
    knitr,
    rmarkdown,
    styler,
    testthat (>= 3.0.0)
VignetteBuilder: 
    knitr
Encoding: UTF-8
RoxygenNote: 7.1.2
RdMacros: mathjaxr
biocViews: 
    Alignment, 
    ddPCR,
    Coverage,
    MultipleSequenceAlignment,
    SequenceMatching,
    qPCR
biocType: 
    Software 
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/rprimer
git_branch: devel
git_last_commit: bc508a0
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
