Package: regsplice
Version: 1.37.0
Title: L1-regularization based methods for detection of differential splicing
Description: Statistical methods for detection of differential splicing 
    (differential exon usage) in RNA-seq and exon microarray data, using 
    L1-regularization (lasso) to improve power.
Authors@R: person("Lukas M.", "Weber", email = "lmweb012@gmail.com", role = c("aut", "cre"))
Author: Lukas M. Weber [aut, cre]
Maintainer: Lukas M. Weber <lmweb012@gmail.com>
URL: https://github.com/lmweber/regsplice
BugReports: https://github.com/lmweber/regsplice/issues
License: MIT + file LICENSE
LazyData: true
Imports:
    glmnet,
    SummarizedExperiment,
    S4Vectors,
    limma,
    edgeR,
    stats,
    pbapply,
    utils,
    methods
Suggests:
    testthat,
    BiocStyle,
    knitr,
    rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.0
biocViews: ImmunoOncology, AlternativeSplicing, DifferentialExpression, DifferentialSplicing,
    Sequencing, RNASeq, Microarray, ExonArray, ExperimentalDesign, Software
Collate:
    'class_RegspliceResults.R'
    'class_RegspliceData.R'
    'LRTests.R'
    'createDesignMatrix.R'
    'filterLowCounts.R'
    'filterZeros.R'
    'fitting_functions_multiple_genes.R'
    'fitting_functions_single_gene.R'
    'helper_functions.R'
    'initializeResults.R'
    'regsplice_wrapper.R'
    'runNormalization.R'
    'runVoom.R'
    'summaryTable.R'
git_url: https://git.bioconductor.org/packages/regsplice
git_branch: devel
git_last_commit: e903be0
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
