Package: qPLEXanalyzer
Type: Package
Title: Tools for quantitative proteomics data analysis
Version: 1.29.0
Date: 2024-09-18
Authors@R: c(person("Matthew","Eldridge", role = "aut"),
             person("Kamal", "Kishore", role = "aut", 
                    email = "kamal.fartiyal84@gmail.com"),
             person("Ashley", "Sawle", role=c("aut", "cre"),
                     email="ads2202cu@gmail.com"))
Description: Tools for TMT based quantitative proteomics data analysis.
License: GPL-2
Imports: assertthat, 
         BiocGenerics,
         Biostrings, 
         dplyr (>= 1.0.0),
         ggdendro, 
         ggplot2, 
         graphics, 
         grDevices, 
         IRanges, 
         limma, 
         magrittr,
         preprocessCore, 
         purrr, 
         RColorBrewer, 
         readr,
         rlang,
         scales,
         stats, 
         stringr, 
         tibble, 
         tidyr, 
         tidyselect,
         utils
Depends: R (>= 4.0), Biobase, MSnbase
Suggests: 
    patchwork,
    knitr,
    qPLEXdata,
    rmarkdown,
    statmod,
    testthat,
    UniProt.ws,
    vdiffr
VignetteBuilder: knitr
biocViews: ImmunoOncology, Proteomics, MassSpectrometry, Normalization, Preprocessing, QualityControl, DataImport
BugReports: https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/qPLEXanalyzer
git_branch: devel
git_last_commit: d72dc3a
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
