Promoter annotation data for Gencode.vM25 including all the annotation objects required for promoter activity estimation

A GRanges object containing the tss coordinate for each promoter for Gencode vM25

promoterAnnotation.gencode.vM25

Format

A PromoterAnnotation (S4 Class) object containing all the promoter annotation objects for Gencode.vM25. The object has 3 slots:

intronRanges

A GRanges object of 285,067 ranges corresponding to introns, annotated with the associated transcript.

promoterIdMapping

The id mapping between transcript names, promoter ids and gene ids for Gencode vM25.

promoterCoordinates

A GRanges object of 91,902 ranges showing the tss coordinate for each promoter of Gencode vM25, annotated with the associated gene id, coordinate of the 3' end of the first reduced exon, and intron id.