Promoter annotation data for Gencode.vM1 including all the annotation objects required for promoter activity estimation

A GRanges object containing the tss coordinate for each promoter for Gencode vM1

promoterAnnotation.gencode.vM1

Format

A PromoterAnnotation (S4 Class) object containing all the promoter annotation objects for Gencode.vM1. The object has 3 slots:

intronRanges

A GRanges object of 243,332 ranges corresponding to introns, annotated with the associated transcript.

promoterIdMapping

The id mapping between transcript names, promoter ids and gene ids for Gencode vM1.

promoterCoordinates

A GRanges object of 60,768 ranges showing the tss coordinate for each promoter of Gencode vM1, annotated with the associated gene id, coordinate of the 3' end of the first reduced exon, and intron id.