Package: plyxp
Title: Data masks for SummarizedExperiment enabling dplyr-like manipulation
Version: 1.5.0
Authors@R: c(
    person("Justin", "Landis", email = "jtlandis314@gmail.com", role = c("aut", "cre"),
    comment = c(ORCID = "0000-0001-5501-4934")),
    person("Michael", "Love", email = "michaelisaiahlove@gmail.com", role = "aut",
    comment = c(ORCID = "0000-0001-8401-0545")))
Description: The package provides `rlang` data masks for the SummarizedExperiment class. The enables the evaluation of unquoted expression in different contexts of the SummarizedExperiment object with optional access to other contexts. The goal for `plyxp` is for evaluation to feel like a data.frame object without ever needing to unwind to a rectangular data.frame.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Imports:
    dplyr,
    purrr,
    rlang,
    SummarizedExperiment,
    tidyr,
    tidyselect,
    vctrs,
    tibble,
    pillar,
    cli,
    glue,
    S7,
    S4Vectors,
    utils,
    methods
Depends:
    R (>= 4.5.0)
Suggests:
    devtools,
    knitr,
    rmarkdown,
    testthat,
    airway,
    IRanges,
    here
LazyData: true
URL: https://github.com/jtlandis/plyxp, https://jtlandis.github.io/plyxp
BugReports: https://www.github.com/jtlandis/plyxp/issues
biocViews: Annotation, GenomeAnnotation, Transcriptomics
Config/testthat/edition: 3
Collate:
    'as.data.frame.R'
    'connect_masks.R'
    'context-utils.R'
    'data.R'
    'dplyr-across.R'
    'dplyr-arrange.R'
    'dplyr-filter.R'
    'dplyr-group_by.R'
    'dplyr-mutate.R'
    'dplyr-pull.R'
    'dplyr-select.R'
    'dplyr-slice.R'
    'dplyr-summarise.R'
    'group_utils.R'
    'grouped_list.R'
    'vctrs-S4-.R'
    'vctrs-S4-rep.R'
    'vctrs-S4-unchop.R'
    'vctrs-S4-chop.R'
    'mask_env_top.R'
    'plyxp-R6-manager.R'
    'plyxp-R6.R'
    'plyxp-class.R'
    'plyxp-package.R'
    'plyxp-quos.R'
    'plyxp.R'
    'plyxp_cannot.R'
    'print.R'
    'reexports-SummarizedExperiment.R'
    'reexports-dplyr.R'
    'utils.R'
    'vctrs-S4-group.R'
    'vctrs-S4-recycle.R'
    'vctrs-S4-slice.R'
    'zzz-globals.R'
    'zzz.R'
git_url: https://git.bioconductor.org/packages/plyxp
git_branch: devel
git_last_commit: b0d04f2
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
