Package: peakPantheR
Title: Peak Picking and Annotation of High Resolution Experiments
Version: 1.25.0
Date: 2025-09-27
Authors@R: c(person("Arnaud", "Wolfer", email = "adwolfer@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5856-3218")),
	person("Goncalo", "Correia", email = "gscorreia89@gmail.com", role = "aut", comment = c(ORCID = "0000-0001-8271-9294")),
	person("Jake", "Pearce", email = "jake.pearce@gmail.com", role = "ctb"),
	person("Caroline", "Sands", email = "caz119@hotmail.co.uk", role = "ctb"))
Description: An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files.
    It enables the real time annotation of multiple compounds in a single file, or the parallel annotation of multiple compounds in multiple files.
    A graphical user interface as well as command line functions will assist in assessing the quality of annotation and update fitting parameters until a satisfactory result is obtained.
Depends:
	R (>= 4.5)
Imports: 
	foreach (>= 1.4.4),
	doParallel (>= 1.0.11),
	ggplot2 (>= 3.5.0),
	gridExtra (>= 2.3),
	MSnbase (>= 2.4.0),
	mzR (>= 2.12.0),
	stringr (>= 1.2.0),
	methods (>= 3.4.0),
	XML (>= 3.98.1.10),
	minpack.lm (>= 1.2.1),
	scales(>= 0.5.0),
	shiny (>= 1.0.5),
	bslib,
	shinycssloaders (>= 1.0.0),
	DT (>= 0.15),
	pracma (>= 2.2.3),
	utils,
	lubridate,
	svglite (>= 2.1.1)
biocViews: MassSpectrometry, Metabolomics, PeakDetection
License: GPL-3
BugReports: https://github.com/phenomecentre/peakPantheR/issues/new
URL: https://github.com/phenomecentre/peakPantheR
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.3
Suggests: testthat,
    devtools,
	faahKO,
	msdata,
	knitr,
	rmarkdown,
	pander,
	BiocStyle
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/peakPantheR
git_branch: devel
git_last_commit: 5618c13
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
