Package: oligoClasses
Version: 1.73.0
Title: Classes for high-throughput arrays supported by oligo and crlmm
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com> and Robert Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.14)
Imports: BiocGenerics (>= 0.27.1), Biobase (>= 2.17.8), methods,
	 graphics, IRanges (>= 2.5.17), GenomicRanges (>= 1.23.7),
	 SummarizedExperiment, Biostrings (>= 2.23.6), affyio (>= 1.23.2),
	 foreach, BiocManager, utils, S4Vectors (>= 0.9.25), RSQLite, DBI, ff
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
Suggests: hapmapsnp5, hapmapsnp6,
          pd.genomewidesnp.6,
	  pd.genomewidesnp.5,
	  pd.mapping50k.hind240,
	  pd.mapping50k.xba240,
	  pd.mapping250k.sty,
	  pd.mapping250k.nsp,
	  genomewidesnp6Crlmm (>= 1.0.7),
	  genomewidesnp5Crlmm (>= 1.0.6),
	  RUnit,
	  human370v1cCrlmm, VanillaICE, crlmm
Description: This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
License: GPL (>= 2)
LazyLoad: yes
Collate: AllClasses.R
          AllGenerics.R
	  utils-general.R
	  utils-lds.R
	  utils-parallel.R
	  methods-gSet.R
          initialize-methods.R
          methods-AlleleSet.R
	  methods-AnnotatedDataFrame.R
          methods-FeatureSet.R
	  methods-AssayData.R
          methods-SnpFeatureSet.R
	  methods-oligoSnpSet.R
	  methods-CopyNumberSet.R
	  methods-CNSet.R
          methods-PDInfo.R
	  methods-RangedDataCNV.R
	  methods-SnpSet.R
	  methods-GenomeAnnotatedDataFrame.R
	  methods-BeadStudioSet.R
	  methods-BeadStudioSetList.R
	  methods-gSetList.R
	  methods-GRanges.R
	  methods-SummarizedExperiment.R
          show-methods.R
	  functions.R
	  zzz.R
biocViews: Infrastructure
## Local Variables: 
## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
## End: 
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/oligoClasses
git_branch: devel
git_last_commit: 924ec0a
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
