Package: notameViz
Type: Package
Title: Workflow for non-targeted LC-MS metabolic profiling
Version: 1.1.0
Authors@R: c(
    person("Anton", "Klåvus", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0003-2612-0230")),
    person("Jussi", "Paananen", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0001-5100-4907")),
    person("Oskari", "Timonen", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0002-6317-6260")),
    person("Atte", "Lihtamo", role = "aut"),
    person("Vilhelm", "Suksi", email = "vksuks@utu.fi", role = c("aut", "cre"), 
           comment = c(ORCID = "0009-0005-1108-518X")),
    person("Retu", "Haikonen", role = "aut",
           comment = c(ORCID = "0000-0003-0830-3850")),
    person("Leo", "Lahti", role = "aut",
           comment = c(ORCID = "0000-0001-5537-637X")),
    person("Kati", "Hanhineva", role = "aut",
           comment = c(ORCID = "0000-0001-6834-7375")),
    person("Ville", "Koistinen", role = "ctb",
           comment = c(ORCID = "0000-0003-1587-8361")),
    person("Olli", "Kärkkäinen", role = "ctb",
           comment = c(ORCID = "0000-0003-0825-4956")),
    person("Artur", "Sannikov", role = "ctb"))
Description: Provides visualization functionality for untargeted LC-MS metabolomics research. Includes quality control visualizations, feature-wise visualizations and results visualizations.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: BiomedicalInformatics, Metabolomics, DataImport, MassSpectrometry, BatchEffect, MultipleComparison, Normalization, QualityControl, Visualization, Preprocessing
Depends:
    R (>= 4.5.0),
    ggplot2,
    SummarizedExperiment
Imports:
    BiocGenerics,
    cowplot,
    devEMF,
    dplyr,
    ggbeeswarm,
    ggdendro,
    ggrepel,
    grDevices,
    methods,
    notame,
    scales,
    stringr,
    stats, 
    tibble,
    tidyr,
    utils
Suggests:
    batchCorr,
    BiocStyle,
    igraph,
    knitr,
    notameStats,
    pcaMethods,
    Rtsne,
    testthat
URL: https://github.com/hanhineva-lab/notameViz
BugReports: https://github.com/hanhineva-lab/notameViz/issues
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/testthat/parallel: true
git_url: https://git.bioconductor.org/packages/notameViz
git_branch: devel
git_last_commit: 1590e89
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
