Uses a genome object to find context and generate standard SBS192 table
using transcript strand
Usage
create_sbs192_table(musica, g, strand_type, overwrite = FALSE)
Arguments
- musica
Input samples
- g
A BSgenome object indicating which genome
reference the variants and their coordinates were derived from.
- strand_type
Transcript_Strand or Replication_Strand
- overwrite
Overwrite existing count table
Value
Returns the created SBS192 count table object built using either
transcript strand or replication strand