Package: multistateQTL
Type: Package
Date: 2025-03-07
Title: Toolkit for the analysis of multi-state QTL data
Version: 2.3.0
Authors@R: c(
    person("Christina", "Del Azodi", role=c("aut"), email="cazodi@svi.edu.au"), 
    person("Davis","McCarthy", role=c("ctb"), email="dmccarthy@svi.edu.au"),
    person("Amelia","Dunstone", role=c("cre", "aut"), email="amelia.dunstone@svi.edu.au", comment=c(ORCID="0009-0009-6426-1529")))
Description: A collection of tools for doing various analyses of
    multi-state QTL data, with a focus on visualization and interpretation.
    The package 'multistateQTL' contains functions which can remove or impute 
    missing data, identify significant associations, as well as categorise features into global,
    multi-state or unique. The analysis results are stored in a 'QTLExperiment' object, 
    which is based on the 'SummarisedExperiment' framework.
License: GPL-3
URL: https://github.com/dunstone-a/multistateQTL
BugReports: https://github.com/dunstone-a/multistateQTL/issues
Encoding: UTF-8
Depends: 
    QTLExperiment,
    SummarizedExperiment,
    ComplexHeatmap,
    collapse
Imports: 
    methods,
    S4Vectors,
    data.table,
    grid,
    dplyr,
    tidyr,
    matrixStats,
    stats,
    fitdistrplus,
    viridis,
    ggplot2,
    circlize,
    mashr,
    grDevices
Suggests: 
    testthat,
    BiocStyle,
    knitr,
    covr,
    rmarkdown
biocViews: FunctionalGenomics, GeneExpression, Sequencing, Visualization, SNP, Software
VignetteBuilder: knitr
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/multistateQTL
git_branch: devel
git_last_commit: b4ce60c
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
