Karyo/Interval Plot GRanges(List) — plot_karyogram • multicrispr

Karyo/Interval Plot GRanges(List)

plot_karyogram(grlist, title = unique(genome(grlist)))

Arguments

grlist	`GRanges-class`
title	plot title

Value

list

See also

plot_intervals

Examples

# Plot GRanges
    bedfile <-  system.file('extdata/SRF.bed',  package = 'multicrispr')
    gr <- bed_to_granges(bedfile, 'mm10', plot = FALSE)
#> 	Read SRF.bed into GRanges
#> 		1974 ranges on 21 chromosomes
    plot_karyogram(gr)

# Plot GRangesList
    flanks  <- up_flank(gr, stranded=FALSE)
    grlist <- GenomicRanges::GRangesList(sites = gr, flanks = flanks)
    plot_karyogram(grlist)