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add_inverse_strand()
|
Add inverse strand |
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add_seq()
|
Add sequence to GRanges |
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bed_to_granges()
|
Read bedfile into GRanges |
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char_to_granges()
|
Convert character vector into GRanges |
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double_flank()
|
Double flank |
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extend_for_pe()
|
Extend ranges for prime editing |
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extend_pe_to_gg()
|
Extend prime editing target to find GG sites |
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extract_matchranges()
|
Extract matching subranges |
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extract_subranges()
|
Extract subranges |
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find_gg()
|
Find GG |
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find_primespacers()
|
Find prime editing spacers |
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find_spacers()
|
Find crispr spacers in targetranges |
|
genes_to_granges() genefile_to_granges()
|
Convert geneids into GRanges |
|
gr2dt() dt2gr()
|
GRanges <-> data.table |
|
has_been_indexed()
|
Has been indexed? |
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index_genome()
|
Index genome |
|
index_targets()
|
Index targets |
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plot_intervals()
|
Interval plot GRanges |
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plot_karyogram()
|
Karyo/Interval Plot GRanges(List) |
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up_flank() down_flank() extend()
|
Extend or Flank GRanges |
|
write_ranges() read_ranges()
|
Write GRanges to file |