Package: mosdef
Title: MOSt frequently used and useful Differential Expression Functions
Version: 1.7.0
Authors@R: 
    c(
        person(
            given = "Leon", family = "Dammer", role = c("aut"), 
            email = "lc.dammer@gmail.com", comment = c(ORCID = "0009-0008-4132-7639")
        ),
        person(
            given = "Federico", family = "Marini", role = c("aut", "cre"), 
            email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
        )
    )
Description: This package provides functionality to run a number of tasks in the 
    differential expression analysis workflow. This encompasses the most widely 
    used steps, from running various enrichment analysis tools with a unified interface
    to creating plots and beautifying table components linking to external websites
    and databases. This streamlines the generation of comprehensive analysis reports.
Depends:
    R (>= 4.4.0)
Imports:
    DT,
    ggplot2,
    ggforce, 
    ggrepel,
    graphics,
    grDevices,
    htmltools,
    methods,
    AnnotationDbi,
    topGO,
    GO.db,
    clusterProfiler, 
    goseq,
    utils,
    RColorBrewer,
    rlang,
    DESeq2,
    scales,
    SummarizedExperiment,
    S4Vectors,
    stats
Suggests: 
    knitr,
    rmarkdown,
    macrophage,
    org.Hs.eg.db,
    GeneTonic,
    testthat (>= 3.0.0),
    TxDb.Hsapiens.UCSC.hg38.knownGene,
    BiocStyle
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
URL: https://github.com/imbeimainz/mosdef
BugReports: https://github.com/imbeimainz/mosdef/issues
Config/testthat/edition: 3
biocViews:
    GeneExpression, Software, Transcription, Transcriptomics, DifferentialExpression,
    Visualization, ReportWriting, GeneSetEnrichment, GO
git_url: https://git.bioconductor.org/packages/mosdef
git_branch: devel
git_last_commit: 06b8376
git_last_commit_date: 2025-12-01
Repository: Bioconductor 3.23
