Package: leapR
Title: Layered enrichment analysis of pathways R
Version: 0.99.5
Authors@R: c(
    person("Sara", "Gosline", email = "sara.gosline@pnnl.gov", role = c('aut',"cre"), comment = c(ORCID = "0000-0002-6534-4774")),
    person("Jason", "McDermott", email = "jason.mcdermott@pnnl.gov", role = "aut"),
    person("Vincent","Danna",email="vincent.danna@pnnl.gov",role='ctb'),
    person("National Institutes of Health", , role = 'fnd'))
Description: leapR is a package that identifies pathways that are enriched across diverse 'omics experiments. It leverages any tabular expression data (proteomics, transcriptomics) using the `SummarizedExperiment` object. It works with any pathway in the .gct file format. 
Depends: R (>= 4.5.0)
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.3
biocViews: 
  GeneSetEnrichment,
  Proteomics,
  Pathways,
  GeneExpression, 
  Transcriptomics
Imports:
    stats,
    gplots,
    readr,
    tibble,
    gplots,
    methods, 
    SummarizedExperiment
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
License: MIT + file LICENSE
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/leapR
git_branch: devel
git_last_commit: d721db9
git_last_commit_date: 2025-11-05
Repository: Bioconductor 3.23
