Package: kissDE
Version: 1.31.0
Title: Retrieves Condition-Specific Variants in RNA-Seq Data
Description: Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.
Authors@R: c(
	person("Clara", "Benoit-Pilven", email = "clara.benoitp@gmail.com", role = "aut"),
	person("Camille", "Marchet", email = "camille.marchet@inria.fr", role = "aut"),
	person("Janice", "Kielbassa", email = "janice.kielbassa@lyon.unicancer.fr", role = "aut"),
	person("Lilia", "Brinza", role = "aut"),
	person("Audric", "Cologne", email = "audric.cologne@gmail.com", role = "aut"),
	person("Aurélie", "Siberchicot", email = "aurelie.siberchicot@univ-lyon1.fr", role = c("aut", "cre")),
	person("Vincent", "Lacroix", email = "vincent.lacroix@univ-lyon1.fr", role = "aut"),
	person("Frank", "Picard", role = "ctb"), 
	person("Laurent", "Jacob", role = "ctb"), 
	person("Vincent", "Miele", role = "ctb"))
Imports: aods3, Biobase, DESeq2, DSS, ggplot2, gplots, graphics, grDevices, matrixStats, stats, utils, foreach, doParallel, parallel, shiny, shinycssloaders, ade4, factoextra, DT
Suggests: BiocStyle, testthat
License: GPL (>= 2)
Contact: Vincent Lacroix <vincent.lacroix@univ-lyon1.fr>
Encoding: UTF-8
biocViews: AlternativeSplicing, DifferentialSplicing, ExperimentalDesign, GenomicVariation, RNASeq, Transcriptomics
URL: https://github.com/lbbe-software/kissDE
Issues: https://github.com/lbbe-software/kissDE/issues
git_url: https://git.bioconductor.org/packages/kissDE
git_branch: devel
git_last_commit: ba36c2d
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
