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	modified:   ../R/igvR.R
	modified:   404.html
	modified:   LICENSE-text.html
	modified:   articles/index.html
	modified:   articles/v00.basicIntro.html
	modified:   articles/v01.stockGenome.html
	modified:   articles/v02.customGenome.html
	modified:   articles/v03.ctcfChIP.html
	modified:   articles/v04.pairedEnd.html
	modified:   articles/v05.ucscTableBrowser.html
	modified:   articles/v06.annotationHub.html
	modified:   articles/v07.gwas.html
	modified:   authors.html
	modified:   index.html
	modified:   junk
	modified:   pkgdown.yml
	modified:   reference/BedpeInteractionsTrack-class.html
	modified:   reference/DataFrameAnnotationTrack-class.html
	modified:   reference/DataFrameQuantitativeTrack-class.html
	modified:   reference/GFF3Track-class.html
	modified:   reference/GRangesAnnotationTrack-class.html
	modified:   reference/GRangesQuantitativeTrack-class.html
	modified:   reference/GWASTrack-class.html
	modified:   reference/GWASUrlTrack-class.html
	modified:   reference/GenomicAlignmentTrack-class.html
	modified:   reference/QuantitativeTrack-class.html
	modified:   reference/RemoteAlignmentTrack-class.html
	modified:   reference/Track-class.html
	modified:   reference/UCSCBedAnnotationTrack-class.html
	modified:   reference/UCSCBedGraphQuantitativeTrack-class.html
	modified:   reference/VariantTrack-class.html
	modified:   reference/currently.supported.stock.genomes.html
	modified:   reference/displayTrack.html
	modified:   reference/enableMotifLogoPopups.html
	modified:   reference/getGenomicRegion.html
	modified:   reference/getSupportedGenomes.html
	modified:   reference/getTrackNames.html
	modified:   reference/igvAnnotationTrack-class.html
	modified:   reference/igvR-class.html
	modified:   reference/index.html
	modified:   reference/parseAndValidateGenomeSpec.html
	modified:   reference/ping.html
	modified:   reference/removeTracksByName.html
	modified:   reference/saveToSVG.html
	modified:   reference/setCustomGenome.html
	modified:   reference/setGenome.html
	modified:   reference/setTrackClickFunction.html
	modified:   reference/setTrackHeight.html
	modified:   reference/showGenomicRegion.html
	modified:   reference/showTrackLabels.html
	modified:   reference/trackInfo.html
	modified:   reference/trackSize-BedpeInteractionsTrack-method.html
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	modified:   reference/trackSize-DataFrameQuantitativeTrack-method.html
	modified:   reference/trackSize-GFF3Track-method.html
	modified:   reference/trackSize-GRangesAnnotationTrack-method.html
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	modified:   reference/trackSize-GWASTrack-method.html
	modified:   reference/trackSize-GWASUrlTrack-method.html
	modified:   reference/trackSize-GenomicAlignmentTrack-method.html
	modified:   reference/trackSize-UCSCBedAnnotationTrack-method.html
	modified:   reference/trackSize-UCSCBedGraphQuantitativeTrack-method.html
	modified:   reference/trackSize-VariantTrack-method.html
	modified:   reference/trackSize.html
	modified:   reference/url.exists.html
	modified:   reference/zoomIn.html
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	modified:   search.json
	modified:   ../inst/demos/gwasDemo.R
	modified:   ../inst/demos/methylationFromAnnotationHub.R
	modified:   ../inst/demos/vcfDemo.R

Untracked files:
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	../explore/gwasTrack/gwas_sample.tsv-hidden
	../explore/gwasTrack/new/
	../inst/demos/chr2-sub-hg38.vcf
	../inst/demos/chr2.vcf.gz.tbi
	../inst/demos/chr7.vcf.gz.tbi
	../inst/demos/hg19ToHg38.over.chain
	../inst/demos/nstd186.GRCh38.variant_call.vcf.gz.tbi
	../inst/demos/tmp.R
	../inst/extdata/bed.10.RData
	../inst/extdata/bed.12.RData
	../inst/extdata/ecrg4-eqtls-popupData.RData
	../inst/extdata/geneAnnotations/
	../inst/extdata/gwas/alzheimerSubsetOfGWASCatatalog-12jun2022.RData
	../inst/unitTests/foo.svg
	../inst/unitTests/trem2-mm10.bw
	../junk
	../vignettes/ctcfChIP-raw
	../vignettes/ctcfChipSeq.R
	../vignettes/customGenome.R
	../vignettes/hidden/
	../vignettes/images/gwas-01.png
	../vignettes/images/gwas-02.png
	../vignettes/images/gwas-03.png
	../vignettes/images/gwas-04.png
	../vignettes/junk
	../vignettes/macs2/
	../vignettes/stockGenome.R
	../vignettes/ucscTableBrowser.R
	../vignettes/v08.vcf.Rmd-deferred

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