Package: igblastr
Title: User-friendly R Wrapper to IgBLAST
Description: The igblastr package provides functions to conveniently install
	and use a local IgBLAST installation from within R.
	IgBLAST is described at <https://pubmed.ncbi.nlm.nih.gov/23671333/>.
	IgBLAST web interface: <https://www.ncbi.nlm.nih.gov/igblast/>.
biocViews: Immunology, Immunogenetics, ImmunoOncology, CellBiology
URL: https://bioconductor.org/packages/igblastr
BugReports: https://github.com/HyrienLab/igblastr/issues
Version: 1.1.8
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Hervé", "Pagès", role=c("aut", "cre"),
	       email="hpages.on.github@gmail.com",
	       comment=c(ORCID="0009-0002-8272-4522")),
	person("Ollivier", "Hyrien", role=c("aut", "fnd"),
	       comment=c(ORCID="0000-0003-1909-2542")),
	person("Kellie", "MacPhee", role="ctb",
	       comment=c(ORCID="0009-0008-0993-4009")),
	person("Michael", "Duff", role="ctb",
	       comment=c(ORCID="0009-0008-4279-0756")),
	person("Jason", "Taylor", role="ctb"))
Depends: R (>= 4.2.0), tibble, Biostrings
Imports: methods, utils, stats, tools,
	R.utils, curl, httr, xml2, rvest, xtable, jsonlite,
	S4Vectors, IRanges, GenomeInfoDb (>= 1.47.2)
Suggests: GenomicAlignments, parallel, testthat, knitr, rmarkdown,
	BiocStyle, ggplot2, dplyr, scales, ggseqlogo
VignetteBuilder: knitr
Collate:
	utils.R
	long_to_wide_airr.R
	translate_codons.R
	file-utils.R
	loci-utils.R
	db-utils.R
	LATIN_NAMES.R
	IMGT-utils.R
	IMGT-c_region-utils.R
	AIRR-utils.R
	precompiled-igblast-utils.R
	cache-utils.R
	get_igblast_root.R
	edit_imgt_file.R
	igblast_info.R
	update_live_igdata.R
	auxdata-utils.R
	install_igblast.R
	make_blastdbs.R
	create_region_db.R
	create_germline_db.R
	create_c_region_db.R
	builtin_db-utils.R
	list_germline_dbs.R
	list_c_region_dbs.R
	install_IMGT_germline_db.R
	install_AIRR_germline_db.R
	augment_germline_db.R
	igblastn-args-utils.R
	read_igblastn_fmt7_output.R
	read_igblastn_AIRR_output.R
	igblastn.R
	igbrowser.R
	summarizeMismatches.R
	OAS-utils.R
	zzz.R
git_url: https://git.bioconductor.org/packages/igblastr
git_branch: devel
git_last_commit: ad99ede
git_last_commit_date: 2025-12-15
Repository: Bioconductor 3.23
