Package: heatmaps
Title: Flexible Heatmaps for Functional Genomics and Sequence Features
Version: 1.35.0
Date: 2025-07-22
Author: Malcolm Perry <mgperry32@gmail.com>
Maintainer: Malcolm Perry <mgperry32@gmail.com>
Depends:
    R (>= 3.4)
Imports:
    methods,
    grDevices,
    graphics,
    stats,
    Biostrings,
    GenomicRanges,
    IRanges,
    KernSmooth,
    plotrix,
    Matrix,
    EBImage,
    RColorBrewer,
    BiocGenerics,
    Seqinfo
Suggests:
    BSgenome.Drerio.UCSC.danRer7,
    knitr,
    rmarkdown,
    testthat
biocViews: Visualization, SequenceMatching, FunctionalGenomics
License: Artistic-2.0
Description: This package provides functions for plotting heatmaps of genome-wide
             data across genomic intervals, such as ChIP-seq signals at peaks or across promoters.
             Many functions are also provided for investigating sequence features.
VignetteBuilder: knitr
Collate:
    Heatmap-class.R
    PlotHeatmap.R
    PlotHeatmapList.R
    PlotPatternDensityMap.R
    PWMScanHeatmap.R
    PatternHeatmap.R
    CoverageHeatmap.R
    SmoothHeatmap.R
    PlotHeatmapMeta.R
    Data.R
NeedsCompilation: no
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/heatmaps
git_branch: devel
git_last_commit: dd77fbc
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
