Package: graphite
Version: 1.57.0
Date: 2025-10-23
Title: GRAPH Interaction from pathway Topological Environment
Authors@R: c(
    person("Gabriele", "Sales", email = "gabriele.sales@unipd.it", role = "cre",
           comment=c(ORCID="0000-0003-2078-5661")),
    person("Enrica", "Calura", email = "enrica.calura@gmail.com", role = "aut"),
    person("Chiara", "Romualdi", email = "chiara.romualdi@unipd.it", role = "aut"))
Description: Graph objects from pathway topology derived from KEGG, Panther,
  PathBank, PharmGKB, Reactome SMPDB and WikiPathways databases.
License: AGPL-3
URL: https://github.com/sales-lab/graphite
BugReports: https://github.com/sales-lab/graphite/issues
Depends: R (>= 4.2), methods
Imports:
    AnnotationDbi,
    graph (>= 1.67.1),
    httr,
    rappdirs,
    stats,
    utils,
    graphics,
    rlang,
    lifecycle,
    purrr,
    dir.expiry
Suggests:
    checkmate,
    a4Preproc,
    ALL,
    BiocStyle,
    clipper,
    codetools,
    hgu133plus2.db,
    hgu95av2.db,
    impute,
    knitr,
    org.Hs.eg.db,
    parallel,
    R.rsp,
    RCy3,
    rmarkdown,
    SPIA (>= 2.2),
    testthat,
    topologyGSA (>= 1.4.0)
Collate: pathway.R fetch.R conversion.R plot.R utils.R clipper.R graph.R spia.R
         tables.R topologygsa.R build.R
VignetteBuilder: R.rsp
biocViews: Pathways, ThirdPartyClient, GraphAndNetwork, Network,
           Reactome, KEGG, Metabolomics
git_url: https://git.bioconductor.org/packages/graphite
git_branch: devel
git_last_commit: 0b372f1
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
