goatea: Interactive Exploration of GSEA by the GOAT Method

Geneset Ordinal Association Test Enrichment Analysis (GOATEA) provides a 'Shiny' interface with interactive visualizations and utility functions for performing and exploring automated gene set enrichment analysis using the 'GOAT' package. 'GOATEA' is designed to support large-scale and user-friendly enrichment workflows across multiple gene lists and comparisons, with flexible plotting and output options. Visualizations pre-enrichment include interactive 'Volcano' and 'UpSet' (overlap) plots. Visualizations post-enrichment include interactive geneset dotplot, geneset treeplot, gene-effectsize heatmap, gene-geneset heatmap and 'STRING' database of protein-protein-interactions network graph. 'GOAT' reference: Frank Koopmans (2024) doi:10.1038/s42003-024-06454-5 .

See also

Useful links:

• https://github.com/mauritsunkel/goatea

• Report bugs at https://github.com/mauritsunkel/goatea/issues

Author

Maintainer: Maurits Unkel mauritsunkel@gmail.com (ORCID) [funder, copyright holder]