Package: gmoviz
Type: Package 
Title: Seamless visualization of complex genomic variations in GMOs and
    edited cell lines
Version: 1.23.0
Authors@R: c(
    person("Kathleen", "Zeglinski", email = "kathleen.zeglinski@csl.com.au", 
    role = c("cre", "aut")), 
    person("Arthur", "Hsu", email = "arthur.hsu@csl.com.au", role = "aut"), 
    person("Monther", "Alhamdoosh", email = "monther.alhamdoosh@csl.com.au", 
    role = "aut", comment = c(ORCID = "0000-0002-2411-1325")), 
    person("Constantinos", "Koutsakis", 
    email = "Constantinos.Koutsakis@csl.com.au", role = "aut"))
Description: Genetically modified organisms (GMOs) and cell lines are widely 
    used models in all kinds of biological research. As part of characterising
    these models, DNA sequencing technology and bioinformatics analyses are 
    used systematically to study their genomes. Therefore, large volumes of 
    data are generated and various algorithms are applied to analyse this data, 
    which introduces a challenge on representing all findings in an informative
    and concise manner. `gmoviz` provides users with an easy way to visualise 
    and facilitate the explanation of complex genomic editing events on a 
    larger, biologically-relevant scale. 
biocViews: 
    Visualization, 
    Sequencing, 
    GeneticVariability, 
    GenomicVariation, 
    Coverage
Depends: 
    circlize, 
    GenomicRanges, 
    graphics,
    R (>= 4.0)
Imports: 
    grid, 
    gridBase, 
    Rsamtools, 
    ComplexHeatmap, 
    BiocGenerics, 
    Biostrings, 
    Seqinfo, 
    methods, 
    GenomicAlignments, 
    GenomicFeatures, 
    IRanges, 
    rtracklayer, 
    pracma, 
    colorspace,
    S4Vectors
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
Suggests: 
    testthat,
    knitr,
    rmarkdown,
    pasillaBamSubset,
    BiocStyle, 
    BiocManager,
    GenomeInfoDb
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/gmoviz
git_branch: devel
git_last_commit: 13acb8f
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
