update the gate — gs_pop_set_gate • flowWorkspace

update the population node with a flowCore-compatible gate object

gh_pop_set_gate(obj, y, value, negated = FALSE, ...)

gs_pop_set_gate(obj, y, value, ...)

Arguments

obj	`GatingHierarchy` or `GatingSet`
y	`character` node name or path
value	`filter` or `filterList` or `list` of `filter` objects
negated	`logical` see add
...	other aguments

Details

Usually recompute is followed by this call since updating a gate doesn't re-calculating the cell events within the gate automatically. see filterObject for the gate types that are currently supported.

Examples

if (FALSE) {  
rg1 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle")
rg2 <- rectangleGate("FSC-H"=c(200,400), "SSC-H"=c(250, 400), filterId="rectangle")
flist <- list(rg1,rg2)
names(flist) <- sampleNames(gs[1:2])
gs_pop_set_gate(gs[1:2], "lymph", flist)
recompute(gs[1:2], "lymph") 
}