Package: erccdashboard
Type: Package
Title: Assess Differential Gene Expression Experiments with ERCC
        Controls
Version: 1.45.0
Author: Sarah Munro, Steve Lund
Maintainer: Sarah Munro <sarah.munro@gmail.com>
Description: Technical performance metrics for differential gene expression
    experiments using External RNA Controls Consortium (ERCC) spike-in ratio
    mixtures.
Depends:
    R (>= 4.0),
    ggplot2 (>= 2.1.0),
    gridExtra (>= 2.0.0)
Imports:
    edgeR,
    gplots,
    grid,
    gtools,
    limma,
    locfit,
    MASS,
    plyr,
    qvalue,
    reshape2,
    ROCR,
    scales,
    stringr,
    knitr
License: GPL (>=2)
Collate:
    runDashboard.R
    initDat.R
    dashboardFile.R
    plotAdjust.R
    loadERCCInfo.R
    loadExpMeas.R
    getDesignMat.R
    normalizeDat.R
    prepERCCDat.R
    est_r_m.R
    dynRangePlot.R
    geneExprTest.R
    testDECount.R
    testDEArray.R
    erccROC.R
    estLODR.R
    printLODRres.R
    saveERCCPlots.R
    maSignal.R
    annotLODR.R
biocViews: ImmunoOncology, GeneExpression, Transcription, AlternativeSplicing,
    DifferentialExpression, DifferentialSplicing, Genetics,
    Microarray, mRNAMicroarray, RNASeq, BatchEffect,
    MultipleComparison, QualityControl
LazyData: yes
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown
Packaged: 2014-09-29 02:40:01 UTC; smunro
Encoding: UTF-8
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/erccdashboard
git_branch: devel
git_last_commit: 44713e8
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
