Package: countsimQC
Type: Package
Title: Compare Characteristic Features of Count Data Sets
Version: 1.29.0
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", comment = c(ORCID = "0000-0003-3833-2169")))
Description: countsimQC provides functionality to create a comprehensive report 
    comparing a broad range of characteristics across a collection of count 
    matrices. One important use case is the comparison of one or more synthetic 
    count matrices to a real count matrix, possibly the one underlying the 
    simulations. However, any collection of count matrices can be compared.
License: GPL (>=2)
Encoding: UTF-8
Depends: R (>= 3.5)
Imports: 
    rmarkdown (>= 2.5),
    edgeR,
    DESeq2 (>= 1.16.0),
    dplyr,
    tidyr,
    ggplot2,
    grDevices,
    tools,
    SummarizedExperiment,
    genefilter,
    DT,
    GenomeInfoDbData,
    caTools,
    randtests,
    stats,
    utils,
    methods,
    ragg
RoxygenNote: 7.3.2
Suggests: 
    knitr,
    testthat
VignetteBuilder: knitr
biocViews: Microbiome, RNASeq, SingleCell, ExperimentalDesign, QualityControl, 
    ReportWriting, Visualization, ImmunoOncology
URL: https://github.com/csoneson/countsimQC
BugReports: https://github.com/csoneson/countsimQC/issues
git_url: https://git.bioconductor.org/packages/countsimQC
git_branch: devel
git_last_commit: 21f3a2b
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
