Type: Package
Package: chevreulPlot
Title: Plots used in the chevreulPlot package
Version: 1.3.0
Authors@R: c(
    person("Kevin", "Stachelek", , "kevin.stachelek@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2085-695X")),
    person("Bhavana", "Bhat", , "bhavanabhat29@gmail.com", role = "aut")
    )
Description: Tools for plotting SingleCellExperiment objects in the 
    chevreulPlot package. Includes functions for analysis and visualization 
    of single-cell data. Supported by NIH grants R01CA137124 and R01EY026661 
    to David Cobrinik.
License: MIT + file LICENSE
URL: 
    https://github.com/whtns/chevreulPlot, 
    https://whtns.github.io/chevreulPlot/
Date: 2024-11-17
BugReports: https://github.com/cobriniklab/chevreulPlot/issues
Depends:
    R (>= 4.5.0),
    SingleCellExperiment,
    chevreulProcess
Imports:
    base,
    cluster,
    clustree,
    ComplexHeatmap (>= 2.5.4),
    circlize,
    dplyr,
    EnsDb.Hsapiens.v86,
    forcats,
    fs,
    ggplot2,
    grid,
    plotly,
    purrr,
    S4Vectors,
    scales,
    scater,
    scran,
    scuttle,
    stats,
    stringr,
    tibble,
    tidyr,
    utils,
    wiggleplotr (>= 1.13.1),
    tidyselect,
    patchwork
Suggests:
    BiocStyle,
    knitr,
    RefManageR,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder:
    knitr
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews:
    Coverage, RNASeq, Sequencing, Visualization, GeneExpression, 
    Transcription, SingleCell, Transcriptomics, Normalization, Preprocessing, 
    QualityControl, DimensionReduction, DataImport
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/chevreulPlot
git_branch: devel
git_last_commit: a18fe12
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
