Package: cellscape
Title: Explores single cell copy number profiles in the context of a
    single cell tree
Version: 1.35.0
Authors@R: c(
    person("Shixiang", "Wang", , "w_shixiang@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9855-7357")),
    person("Maia", "Smith", , "maiaannesmith@gmail.com", role = "aut")
  )
Description: CellScape facilitates interactive browsing of single cell
    clonal evolution datasets. The tool requires two main inputs: (i) the
    genomic content of each single cell in the form of either copy number
    segments or targeted mutation values, and (ii) a single cell
    phylogeny. Phylogenetic formats can vary from dendrogram-like
    phylogenies with leaf nodes to evolutionary model-derived phylogenies
    with observed or latent internal nodes. The CellScape phylogeny is
    flexibly input as a table of source-target edges to support arbitrary
    representations, where each node may or may not have associated
    genomic data. The output of CellScape is an interactive interface
    displaying a single cell phylogeny and a cell-by-locus genomic heatmap
    representing the mutation status in each cell for each locus.
License: GPL-3
Depends: 
    R (>= 3.3)
Imports: 
    dplyr (>= 0.4.3),
    gtools (>= 3.5.0),
    htmlwidgets (>= 0.5),
    jsonlite (>= 0.9.19),
    reshape2 (>=
        1.4.1),
    stringr (>= 1.0.0)
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: 
    knitr
biocViews: Visualization
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/cellscape
git_branch: devel
git_last_commit: 2216fc1
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
