Package: bumphunter
Version: 1.53.0
Title: Bump Hunter
Description: Tools for finding bumps in genomic data
Authors@R: c(person(c("Rafael", "A."), "Irizarry", role = "aut", email
    = "rafa@ds.dfci.harvard.edu"), person("Martin", "Aryee", role = "aut"),
    person(c("Kasper", "Daniel"), "Hansen", role = "aut"), person(c("Hector",
    "Corrada"), "Bravo", role = "aut"), person("Shan", "Andrews", role =
    "ctb"), person(c("Andrew", "E."), "Jaffe", role = "ctb"), person("Harris",
    "Jaffee", role = "ctb"), person("Leonardo", "Collado-Torres", role="ctb"),
    person("Tamilselvi", "Guharaj", role = "cre", email =
    "selvi@ds.dfci.harvard.edu"))
Depends:
    R (>= 3.5),
    S4Vectors (>= 0.9.25),
    IRanges (>= 2.3.23),
    Seqinfo,
    GenomicRanges,
    foreach,
    iterators,
    methods,
    parallel,
    locfit
Suggests:
    testthat,
    RUnit,
    doParallel,
    GenomeInfoDb,
    txdbmaker,
    org.Hs.eg.db,
    TxDb.Hsapiens.UCSC.hg19.knownGene
Imports:
    matrixStats,
    limma,
    doRNG,
    BiocGenerics,
    utils,
    GenomicFeatures,
    AnnotationDbi,
    stats
License: Artistic-2.0
LazyData: yes
URL: https://github.com/rafalab/bumphunter
biocViews: DNAMethylation, Epigenetics, Infrastructure,
    MultipleComparison, ImmunoOncology
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/bumphunter
git_branch: devel
git_last_commit: 19ed02f
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
