Package: breakpointR
Type: Package
Title: Find breakpoints in Strand-seq data
Version: 1.29.0
Date: 2021-11-20
Author: David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer: David Porubsky <david.porubsky@gmail.com>
Description: This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Depends:
  R (>= 3.5),
  GenomicRanges,
  cowplot,
  breakpointRdata
Imports:
  methods,
  utils,
  grDevices,
  stats,
  S4Vectors,
  GenomeInfoDb (>= 1.12.3),
  IRanges,
  Rsamtools,
  GenomicAlignments,
  ggplot2,
  BiocGenerics,
  gtools,
  doParallel,
  foreach
Suggests:
  knitr,
  BiocStyle,
  testthat
License: file LICENSE
LazyLoad: yes
VignetteBuilder: knitr
Packaged: 2015-09-19 13:29:00 CET+1; Taudt
biocViews: Software, Sequencing, DNASeq, SingleCell, Coverage
URL: https://github.com/daewoooo/BreakPointR
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/breakpointR
git_branch: devel
git_last_commit: 5469268
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
