Package: borealis
Type: Package
Title: Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
Version: 1.15.0
Authors@R: person(given = "Garrett",
            family = "Jenkinson",
            role = c("aut", "cre"),
            email = "gargar934@gmail.com",
            comment = c(ORCID = "0000-0003-2548-098X"))
Depends: R (>= 4.2.0), Biobase
Imports:  doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist, bsseq, 
    methods, DSS, R.utils, utils, stats, ggplot2, cowplot, dplyr, rlang,
    GenomicRanges
Description: Borealis is an R library performing outlier analysis for
    count-based bisulfite sequencing data. It detectes outlier
    methylated CpG sites from bisulfite sequencing
    (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This
    can be useful for rare disease diagnoses. 
License: GPL-3
Encoding: UTF-8
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr, tidyr, 
    TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
VignetteBuilder: knitr
biocViews: Sequencing, Coverage, DNAMethylation, DifferentialMethylation
git_url: https://git.bioconductor.org/packages/borealis
git_branch: devel
git_last_commit: f928ff2
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
