Package: blase
Title: Bulk Linking Analysis for Single-cell Experiments
Version: 1.1.0
Authors@R: c(
  person("Andrew", "McCluskey", , "2117532m@student.gla.ac.uk", role = c("aut", "cre"), comment = c(ORCID = "0009-0004-4187-799X")),
  person("Toby", "Kettlewell", , , role = c("aut"), comment = c(ORCID = "0009-0001-1225-3318")),
  person("Adrian M.", "Smith", , , role = c("aut"), comment = c(ORCID="0000-0001-8833-2330")),
  person("Rhiannon", "Kundu", , , role = c("aut"), comment = c(ORCID="0000-0003-3970-5860")),
  person("David A.", "Gunn", , , role = c("aut"), comment = c(ORCID="0000-0001-9866-3221")),
  person("Thomas D.", "Otto", , , role=c("aut","ths"), comment=c(ORCID = "0000-0002-1246-7404")))
Description: BLASE is a method for finding where bulk RNA-seq data lies on a 
  single-cell pseudotime trajectory. It uses a fast and understandable approach
  based on Spearman correlation, with bootstrapping to provide confidence. 
  BLASE can be used to "date" bulk RNA-seq data, annotate cell types in
  scRNA-seq, and help correct for developmental phenotype differences in 
  bulk RNA-seq experiments.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
biocViews: 
  Transcriptomics,
  SingleCell,
  Sequencing,
  GeneExpression,
  Transcription,
  RNASeq,
  TimeCourse,
  CellBiology,
  Software,
  CellBasedAssays
Imports: 
  SummarizedExperiment,
  SingleCellExperiment,
  ggplot2,
  viridis,
  patchwork,
  Matrix,
  scater,
  methods,
  rlang,
  BiocParallel,
  boot,
  dplyr,
  mgcv,
  stats,
  MatrixGenerics,
  Seurat (>= 4.0.0)
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.2.3),
    covr,
    tradeSeq,
    scran,
    slingshot,
    tools,
    ami,
    reshape2,
    plyr,
    fs,
    sparseMatrixStats,
    ggVennDiagram,
    uwot,
    BiocStyle,
    DelayedMatrixStats,
    limma
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://andrewmccluskey-uog.github.io/blase/
BugReports: https://andrewmccluskey-uog.github.io/blase/issues
Depends: 
    R (>= 4.5.0)
LazyData: false
git_url: https://git.bioconductor.org/packages/blase
git_branch: devel
git_last_commit: 7118ee1
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
