Package: bandle
Type: Package
Title: An R package for the Bayesian analysis of differential subcellular
    localisation experiments
Version: 1.15.0
Authors@R: c(person(family = "Crook", given = "Oliver M.",
		                email = "oliver.crook@stats.ox.ac.uk",
		                comment = c(ORCID = "0000-0001-5669-8506"),
		                role = c("aut", "cre")),
		         person(family = "Breckels", given = "Lisa",
		                email = "lms79@cam.ac.uk",
		                comment = c(ORCID = "0000-0001-8918-7171"),
                                role = c("aut")))
Description: The Bandle package enables the analysis and visualisation of
    differential localisation experiments using mass-spectrometry data.
    Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT, 
    Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure
    to analyse these data.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.1), S4Vectors, Biobase, MSnbase, pRoloc
Imports: Rcpp (>= 1.0.4.6),
    pRolocdata,
    lbfgs,
    ggplot2,
    dplyr,
    plyr,
    knitr,
    methods,
    BiocParallel,
    robustbase,
    BiocStyle,
    ggalluvial,
    ggrepel,
    tidyr,
    circlize,
    graphics,
    stats,
    utils,
    grDevices,
    rlang,
    RColorBrewer,
    gtools, 
    gridExtra,
    coda (>= 0.19-4)
Suggests: 
    testthat,
    interp,
    fields,
    pheatmap,
    viridis,
    rmarkdown,
    spelling
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo, BH
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.2
biocViews: Bayesian, Classification, Clustering, ImmunoOncology,
    QualityControl,DataImport, Proteomics, MassSpectrometry
BugReports: https://github.com/ococrook/bandle/issues
URL: http://github.com/ococrook/bandle
Language: en-US
git_url: https://git.bioconductor.org/packages/bandle
git_branch: devel
git_last_commit: 36c7c56
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
