Package: ToxicoGx
Type: Package
Title: Analysis of Large-Scale Toxico-Genomic Data
Version: 2.15.0
Date: 2023-03-08
Authors@R: c(
  person("Sisira","Nair", email = "sisira.nair@uhnresearch.ca",
    role = c("aut")),
  person("Esther","Yoo", email = "yk.yoo@mail.utoronto.ca",
    role = c("aut")),
  person("Christopher","Eeles", email = "christopher.eeles@uhnresearch.ca",
    role = c("aut")),
  person("Amy", "Tang", email = "amy.tang@queensu.ca",
    role = c("aut")),
  person("Nehme", "El-Hachem", email = "hachemn@gmail.com",
    role = c("aut")),
  person("Petr","Smirnov", email = "petr.smirnov@uhnresearch.ca",
    role = c("aut")),
  person("Jermiah","Joseph", email = "jermiah.joseph@uhn.ca",
    role = c("aut")),
  person("Benjamin","Haibe-Kains", email = "benjamin.haibe.kains@utoronto.ca",
    role = c("aut","cre"))
  )
Description: Contains a set of functions to perform large-scale analysis of
  toxicogenomic data, providing a standardized data structure to hold
  information relevant to annotation, visualization and statistical analysis of
  toxicogenomic data.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1), CoreGx
Imports:
    SummarizedExperiment,
    BiocGenerics,
    S4Vectors,
    Biobase,
    BiocParallel,
    ggplot2,
    tibble,
    dplyr,
    caTools,
    downloader,
    magrittr,
    methods,
    reshape2,
    tidyr,
    data.table,
    assertthat,
    scales,
    graphics,
    grDevices,
    parallel,
    stats,
    utils,
    limma,
    jsonlite
RoxygenNote: 7.2.3
Roxygen: list(markdown=TRUE, r6=FALSE)
VignetteBuilder: knitr
Suggests:
    rmarkdown,
    testthat,
    BiocStyle,
    knitr,
    tinytex,
    devtools,
    PharmacoGx,
    xtable,
    markdown
biocViews: GeneExpression, Pharmacogenetics, Pharmacogenomics, Software
Collate:
    'LogLogisticRegression.R'
    'SanityCheck.R'
    'allGenerics.R'
    'ToxicoSet-class.R'
    'ToxicoSet-accessors.R'
    'class-signature.R'
    'columnsAsCharacter.R'
    'computeAUC.R'
    'computeDrugSensitivity.R'
    'computeIC50.R'
    'computeICn.R'
    'dataset.R'
    'downloadTSet.R'
    'drugGeneResponseCurve.R'
    'drugPerturbationSig.R'
    'drugTimeResponseCurve.R'
    'geneDrugPerturbation.R'
    'geneDrugSensitivity.R'
    'globals.R'
    'methods-computeLimmaDiffExpr.R'
    'methods-subsetTo.R'
    'paramErrorChecker.R'
    'paramMissingHandler.R'
    'paramMissingHandlerTests.R'
    'rankGeneDrugPerturbation.R'
    'rankGeneDrugSensitivity.R'
    'summarizeMolecularProfiles.R'
    'summarizeSensitivityProfiles.R'
    'updateObject-methods.R'
    'utilities.R'
    'zzz.R'
git_url: https://git.bioconductor.org/packages/ToxicoGx
git_branch: devel
git_last_commit: 0781b14
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
