Package: TFEA.ChIP
Version: 1.31.0
Title: TFEA.ChIP, a Tool Kit for Transcription Factor Enrichment
Authors@R: c(person(given = "Yosra", family = "Berrouayel", email = "yosraberrouayel@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-0768-5933")),
	     person(given = "Laura", family = "Puente-Santamaria", email = "laura.puentes@estudiante.uam.es", role = c("aut")),
	     person(given = "Luis", family = "del Peso", email = "lpeso@iib.uam.es", role = c("aut"), comment = c(ORCID = "0000-0003-4014-5688")))
Imports: GenomicRanges, IRanges, biomaRt, GenomicFeatures, GenomicRanges, grDevices,
        dplyr, stats, utils, R.utils, methods, org.Hs.eg.db, org.Mm.eg.db, rlang,
        ExperimentHub
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle,
    S4Vectors,
    Seqinfo,
    meta,
    plotly,
    scales,
    tidyr,
    purrr,
    tibble,
    ggplot2,
    DESeq2,
    edgeR,
    limma,
    babelgene,
    BiocGenerics,
    ggrepel,
    rcompanion,
    TxDb.Hsapiens.UCSC.hg19.knownGene,
    TxDb.Hsapiens.UCSC.hg38.knownGene,
    AnnotationDbi,
    RColorBrewer,
    RUnit,
    testthat (>= 3.0.0)
Description: Package to analyze transcription factor enrichment in a gene set using data from ChIP-Seq experiments.
Depends: R (>= 4.2.0)
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.3.2
LazyData: true
LazyDataCompression: xz
VignetteBuilder: knitr, BiocStyle
biocViews: Transcription, GeneRegulation, GeneSetEnrichment,
        Transcriptomics, Sequencing, ChIPSeq, RNASeq, ImmunoOncology, 
        GeneExpression, ChipOnChip
BuildVignettes: true
URL: https://github.com/yberda/TFEA.ChIP
BugReports: https://github.com/yberda/TFEA.ChIP/issues
git_url: https://git.bioconductor.org/packages/TFEA.ChIP
git_branch: devel
git_last_commit: b0fbb73
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
