Package: SpiecEasi
Title: Sparse Inverse Covariance for Ecological Statistical Inference
Version: 1.99.3
Date: 2025-05-13
Authors@R: c(
    person("Zachary", "Kurtz", role = c("aut", "cre"), email="zdkurtz@gmail.com"),
    person("Christian", "Mueller", role = "aut"),
    person("Emily", "Miraldi",     role="aut"),
    person("Richard", "Bonneau",   role="aut"),
    person("Laura", "Tipton",      role="ctb"))
Description: Estimate networks from the precision matrix of compositional microbial abundance data.
License: GPL (>= 3)
URL: https://github.com/zdk123/SpiecEasi
BugReports: https://github.com/zdk123/SpiecEasi/issues
biocViews: Software, Microbiome, Metagenomics, GraphAndNetwork, NetworkInference
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends:
   R (>= 4.5.0),
Imports:
   stats,
   methods,
   graphics,
   grDevices,
   huge (>= 1.3.2),
   pulsar (>= 0.3.11),
   MASS,
   VGAM,
   Matrix (>= 1.5),
   glmnet,
   phyloseq
Suggests:
    parallel,
    boot,
    igraph,
    batchtools,
    testthat,
    covr,
    knitr,
    BiocStyle,
    rmarkdown,
    RefManageR,
    sessioninfo,
    magick
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/SpiecEasi
git_branch: devel
git_last_commit: 18c9537
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
