Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.47.0
Author: Julian Gehring
Maintainer: Julian Gehring <jg-bioc@gmx.com>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).  It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.
URL: http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html, https://github.com/julian-gehring/SomaticSignatures-release
Imports: S4Vectors, IRanges, Seqinfo, Biostrings, ggplot2, ggbio, reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.1.0), VariantAnnotation, GenomicRanges, NMF
Suggests: testthat, knitr, parallel, GenomeInfoDb, BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations, ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: MIT + file LICENSE
URL: https://github.com/juliangehring/SomaticSignatures
BugReports: https://support.bioconductor.org
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering, GenomicVariation, StatisticalMethod
git_url: https://git.bioconductor.org/packages/SomaticSignatures
git_branch: devel
git_last_commit: 97b6de8
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
