Package: SiPSiC
Type: Package
Title: Calculate Pathway Scores for Each Cell in scRNA-Seq Data
Version: 1.11.0
Date: 2022-12-29
Authors@R: c(person("Daniel", "Davis", role = c("aut", "cre"), email="DanielDavis000@gmail.com", comment=c(ORCID="0000-0001-7863-1521")),
		 person("Yotam", "Drier", role = "aut"))
Description: Infer biological pathway activity of cells from single-cell RNA-sequencing data by calculating a pathway score for each cell (pathway genes are specified by the user). It is recommended to have the data in Transcripts-Per-Million (TPM) or Counts-Per-Million (CPM) units for best results. Scores may change when adding cells to or removing cells off the data. SiPSiC stands for Single Pathway analysis in Single Cells.
License: file LICENSE
URL: https://www.genome.org/cgi/doi/10.1101/gr.278431.123
biocViews: Software, DifferentialExpression, GeneSetEnrichment, BiomedicalInformatics, CellBiology, Transcriptomics, RNASeq, SingleCell, Transcription, Sequencing, ImmunoOncology, DataImport
Depends: Matrix, SingleCellExperiment
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle
VignetteBuilder: knitr
BugReports: https://github.com/DanielDavis12/SiPSiC/issues
git_url: https://git.bioconductor.org/packages/SiPSiC
git_branch: devel
git_last_commit: 45e6d3f
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
