Package: SeqSQC
Title: A bioconductor package for sample quality check with next generation sequencing data
Version: 1.33.0
Authors@R: person("Qian", "Liu", email = "qliu7@buffalo.edu", role = c("aut", "cre"))
Description: The SeqSQC is designed to identify problematic samples in NGS data,
    including samples with gender mismatch, contamination, cryptic relatedness, and
    population outlier.
biocViews: Experiment Data, Homo_sapiens_Data, Sequencing Data, Project1000genomes, Genome
Depends:
	R (>= 3.4),
	ExperimentHub (>= 1.3.7),
	SNPRelate (>= 1.10.2)
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Liubuntu/SeqSQC
BugReports: https://github.com/Liubuntu/SeqSQC/issues
LazyData: true
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Imports:
	e1071,
	GenomicRanges,
	gdsfmt,
	ggplot2,
	GGally, 
	IRanges,
	methods,
	plotly,
	RColorBrewer,
	reshape2,
	rmarkdown,
	S4Vectors,
	stats,
	utils
Suggests:
	BiocStyle,
	knitr,
        testthat
git_url: https://git.bioconductor.org/packages/SeqSQC
git_branch: devel
git_last_commit: 1bf7b5e
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
